Resource
| Id | TF_ChIP-seq/ENCSR000BIU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BIU [biosample_summary="Homo sapiens H1" and target="USF1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN871BLK|/analyses/ENCAN871BLK/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF319RMX|/files/ENCFF319RMX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11505402 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting USF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF410CQF|/files/ENCFF410CQF/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12846454 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting USF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BIU | float |
TF_ChIP-seq_ENCSR000BIU |
TF_ChIP-seq ENCSR000BIU [biosample_summary="Homo sapiens H1" and target="USF1"]
|
 |
[3.87, 535] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6878979 | 0.21% | 30694 |
| chr1 | 631731 | 0.25% | 2821 |
| chr2 | 522616 | 0.22% | 2327 |
| chr3 | 450817 | 0.23% | 2004 |
| chr4 | 330333 | 0.17% | 1450 |
| chr5 | 364178 | 0.20% | 1621 |
| chr6 | 368439 | 0.22% | 1644 |
| chr7 | 343484 | 0.22% | 1531 |
| chr8 | 306648 | 0.21% | 1364 |
| chr9 | 283483 | 0.20% | 1264 |
| chr10 | 320515 | 0.24% | 1426 |
| chr11 | 343128 | 0.25% | 1517 |
| chr12 | 358738 | 0.27% | 1620 |
| chr13 | 162021 | 0.14% | 718 |
| chr14 | 216226 | 0.20% | 957 |
| chr15 | 211422 | 0.21% | 946 |
| chr16 | 301606 | 0.33% | 1362 |
| chr17 | 324153 | 0.39% | 1439 |
| chr18 | 150905 | 0.19% | 662 |
| chr19 | 276519 | 0.47% | 1265 |
| chr20 | 251909 | 0.39% | 1143 |
| chr21 | 81653 | 0.17% | 359 |
| chr22 | 147207 | 0.29% | 664 |
| chrX | 128422 | 0.08% | 577 |
| chrY | 2826 | <0.01% | 13 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 30694 | 13 | 1170 | 224.11 | 240 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF358BEF.bed.gz | 515.36 KB | 3094c785a738fc27832b7fe913c3d950 |
| ENCFF358BEF.tabix.bed.gz | 358.74 KB | 43e1be8247c79d6ac7e73a7c90ae683b |
| ENCFF358BEF.tabix.bed.gz.tbi | 216.42 KB | 491fa1cb4974a8c63f0f2a26a8df7212 |
| genomic_resource.yaml | 2.32 KB | c7341cd084ff96df884f9c160271497d |
| statistics/ |