Resource
| Id | TF_ChIP-seq/ENCSR000BIR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BIR [biosample_summary="Homo sapiens H1" and target="SP1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN917CDF|/analyses/ENCAN917CDF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN917CDF|/analyses/ENCAN917CDF/} has in progress subobject document {25a06fda-e63d-44b8-8798-674d2079d53b|/documents/25a06fda-e63d-44b8-8798-674d2079d53b/} audit_warning: Processed alignments file {ENCFF267MEL|/files/ENCFF267MEL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14889937 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SP1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF735KJJ|/files/ENCFF735KJJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15005917 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SP1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BIR | float |
TF_ChIP-seq_ENCSR000BIR |
TF_ChIP-seq ENCSR000BIR [biosample_summary="Homo sapiens H1" and target="SP1"]
|
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[4.95, 509] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6123568 | 0.19% | 21369 |
| chr1 | 618203 | 0.25% | 2173 |
| chr2 | 401810 | 0.17% | 1406 |
| chr3 | 344072 | 0.17% | 1192 |
| chr4 | 260556 | 0.14% | 898 |
| chr5 | 305421 | 0.17% | 1060 |
| chr6 | 365578 | 0.21% | 1278 |
| chr7 | 321251 | 0.20% | 1120 |
| chr8 | 227166 | 0.16% | 785 |
| chr9 | 240757 | 0.17% | 836 |
| chr10 | 253178 | 0.19% | 887 |
| chr11 | 327226 | 0.24% | 1144 |
| chr12 | 328800 | 0.25% | 1121 |
| chr13 | 128551 | 0.11% | 443 |
| chr14 | 185671 | 0.17% | 649 |
| chr15 | 194533 | 0.19% | 693 |
| chr16 | 236314 | 0.26% | 832 |
| chr17 | 325188 | 0.39% | 1142 |
| chr18 | 98521 | 0.12% | 336 |
| chr19 | 471799 | 0.80% | 1679 |
| chr20 | 176032 | 0.27% | 611 |
| chr21 | 49322 | 0.11% | 172 |
| chr22 | 126585 | 0.25% | 445 |
| chrX | 133313 | 0.09% | 454 |
| chrY | 3721 | 0.01% | 13 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 21369 | 9 | 743 | 286.56 | 320 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF284JVS.bed.gz | 364.61 KB | fc62281eb0f727ea0e46c250ee8cfc0c |
| ENCFF284JVS.tabix.bed.gz | 248.93 KB | 2423fcebde656b07b28f07aa6de42edf |
| ENCFF284JVS.tabix.bed.gz.tbi | 140.17 KB | 1a6fd3312f9624017d494f12e5889928 |
| genomic_resource.yaml | 2.54 KB | 92ff8e4bc60018319a3e1ffa34dda586 |
| statistics/ |
