Resource

Id TF_ChIP-seq/ENCSR000BIRcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BIR [biosample_summary="Homo sapiens H1" and target="SP1"]
Description
Labels
  • accession: ENCSR000BIR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003042/
  • biosample_summary: Homo sapiens H1
  • date_created: 2013-12-12T06:28:41.496506+00:00
  • date_released: 2011-07-18
  • doi: 10.17989/ENCSR000BIR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: SP1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BIR float

TF_ChIP-seq_ENCSR000BIR

TF_ChIP-seq ENCSR000BIR [biosample_summary="Homo sapiens H1" and target="SP1"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BIR [4.95, 509]
n
6,123,568
mean
41.6
sd
42

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 61235680.19% 21369
chr1 618203 0.25% 2173
chr2 401810 0.17% 1406
chr3 344072 0.17% 1192
chr4 260556 0.14% 898
chr5 305421 0.17% 1060
chr6 365578 0.21% 1278
chr7 321251 0.20% 1120
chr8 227166 0.16% 785
chr9 240757 0.17% 836
chr10 253178 0.19% 887
chr11 327226 0.24% 1144
chr12 328800 0.25% 1121
chr13 128551 0.11% 443
chr14 185671 0.17% 649
chr15 194533 0.19% 693
chr16 236314 0.26% 832
chr17 325188 0.39% 1142
chr18 98521 0.12% 336
chr19 471799 0.80% 1679
chr20 176032 0.27% 611
chr21 49322 0.11% 172
chr22 126585 0.25% 445
chrX 133313 0.09% 454
chrY 3721 0.01% 13
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21369 9 743 286.56 320
global segment-length histogram

Files

Filename Size md5
ENCFF284JVS.bed.gz 364.61 KB fc62281eb0f727ea0e46c250ee8cfc0c
ENCFF284JVS.tabix.bed.gz 248.93 KB 2423fcebde656b07b28f07aa6de42edf
ENCFF284JVS.tabix.bed.gz.tbi 140.17 KB 1a6fd3312f9624017d494f12e5889928
genomic_resource.yaml 2.54 KB 92ff8e4bc60018319a3e1ffa34dda586
statistics/