type: position_score
table:
  filename: ENCFF501LDN.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000BIM
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000BIM [TISSUE: Homo sapiens GM12891, TARGET: TAF1]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN230JKF|/analyses/ENCAN230JKF/} has in progress\
    \ subobject document {7da4014a-d673-47dc-9ae7-81d3771c531e|/documents/7da4014a-d673-47dc-9ae7-81d3771c531e/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN230JKF|/analyses/ENCAN230JKF/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF465BXP|/files/ENCFF465BXP/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18840701 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ TAF1-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**:\
    \ Processed alignments file {ENCFF156UOT|/files/ENCFF156UOT/} processed by ChIP-seq\
    \ ENCODE4 v1.6.1 GRCh38 pipeline has 14181027 usable fragments. The minimum ENCODE\
    \ standard for each replicate in a ChIP-seq experiment targeting TAF1-human and\
    \ investigated as a transcription factor is 10 million usable fragments. The recommended\
    \ value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000BIM
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens GM12891
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002785/
    perturbed: false
    doi: 10.17989/ENCSR000BIM
    date_created: '2013-09-13T16:00:33.383550-08:00'
    date_released: '2011-07-18'
    submitter_comment: ''
    target: TAF1