Resource
| Id | TF_ChIP-seq/ENCSR000BIL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BIL [biosample_summary="Homo sapiens GM12891" and target="POLR2AphosphoS5"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF205ZZA|/files/ENCFF205ZZA/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN488UCA|/analyses/ENCAN488UCA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF102LCM|/files/ENCFF102LCM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11551061 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2AphosphoS5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF810NAZ|/files/ENCFF810NAZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14658385 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2AphosphoS5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BIL | float |
TF_ChIP-seq_ENCSR000BIL |
TF_ChIP-seq ENCSR000BIL [biosample_summary="Homo sapiens GM12891" and target="POLR2AphosphoS5"]
|
 |
[6.04, 523] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9957083 | 0.31% | 29543 |
| chr1 | 924853 | 0.37% | 2796 |
| chr1_KI270713v1_random | 523 | 1.28% | 3 |
| chr2 | 674351 | 0.28% | 2018 |
| chr3 | 540592 | 0.27% | 1603 |
| chr4 | 321736 | 0.17% | 970 |
| chr5 | 459637 | 0.25% | 1351 |
| chr6 | 618322 | 0.36% | 1841 |
| chr7 | 474565 | 0.30% | 1408 |
| chr8 | 324191 | 0.22% | 973 |
| chr9 | 402578 | 0.29% | 1181 |
| chr10 | 397246 | 0.30% | 1181 |
| chr11 | 543228 | 0.40% | 1601 |
| chr12 | 533911 | 0.40% | 1574 |
| chr13 | 174777 | 0.15% | 510 |
| chr14 | 356463 | 0.33% | 1075 |
| chr15 | 300108 | 0.29% | 904 |
| chr16 | 472019 | 0.52% | 1380 |
| chr17 | 626921 | 0.75% | 1825 |
| chr18 | 164150 | 0.20% | 464 |
| chr19 | 727922 | 1.24% | 2153 |
| chr20 | 290745 | 0.45% | 872 |
| chr21 | 133360 | 0.29% | 388 |
| chr22 | 249475 | 0.49% | 719 |
| chrEBV | 47861 | 27.85% | 179 |
| chrX | 192667 | 0.12% | 562 |
| chrY | 4882 | 0.01% | 12 |
| 3340 contigs with no values (128864517 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 29543 | 1 | 5379 | 337.04 | 304 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF205ZZA.bed.gz | 470.75 KB | d5df0ae4e09dc935d99566c73f08b6e3 |
| ENCFF205ZZA.tabix.bed.gz | 336.84 KB | dfdf04df1392fed8792a23e0f6f8c726 |
| ENCFF205ZZA.tabix.bed.gz.tbi | 107.41 KB | ac80ab8fe659a9f9bcee3fc2fc56fd40 |
| genomic_resource.yaml | 2.58 KB | a2079e063cc77976383996e9c08ffb81 |
| statistics/ |