Resource
| Id | TF_ChIP-seq/ENCSR000BIK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BIK [biosample_summary="Homo sapiens GM12891" and target="POLR2A"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN120TXA|/analyses/ENCAN120TXA/} has in progress subobject document {a4bf5ef8-542d-407a-ada1-d2055d400129|/documents/a4bf5ef8-542d-407a-ada1-d2055d400129/} audit_internal_action: Released analysis {ENCAN120TXA|/analyses/ENCAN120TXA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF994TBU|/files/ENCFF994TBU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16205338 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF468FSB|/files/ENCFF468FSB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15200143 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BIK | float |
TF_ChIP-seq_ENCSR000BIK |
TF_ChIP-seq ENCSR000BIK [biosample_summary="Homo sapiens GM12891" and target="POLR2A"]
|
 |
[6.56, 507] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9874883 | 0.31% | 29642 |
| chr1 | 963802 | 0.39% | 2933 |
| chr2 | 695070 | 0.29% | 2116 |
| chr3 | 518411 | 0.26% | 1536 |
| chr4 | 310466 | 0.16% | 945 |
| chr5 | 477634 | 0.26% | 1435 |
| chr6 | 620078 | 0.36% | 1841 |
| chr7 | 470111 | 0.30% | 1424 |
| chr8 | 325138 | 0.22% | 954 |
| chr9 | 400215 | 0.29% | 1217 |
| chr10 | 412948 | 0.31% | 1246 |
| chr11 | 515071 | 0.38% | 1534 |
| chr12 | 569204 | 0.43% | 1698 |
| chr13 | 166498 | 0.15% | 518 |
| chr14 | 367444 | 0.34% | 1125 |
| chr15 | 297858 | 0.29% | 902 |
| chr16 | 442049 | 0.49% | 1331 |
| chr17 | 643938 | 0.77% | 1929 |
| chr18 | 148504 | 0.18% | 432 |
| chr19 | 678274 | 1.16% | 2046 |
| chr20 | 266395 | 0.41% | 794 |
| chr21 | 139158 | 0.30% | 381 |
| chr22 | 238522 | 0.47% | 703 |
| chrX | 202425 | 0.13% | 581 |
| chrY | 5670 | 0.01% | 21 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 29642 | 1 | 5353 | 333.14 | 300 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF909CTD.bed.gz | 464.43 KB | b970281f988cfd8c4328b8afc7407920 |
| ENCFF909CTD.tabix.bed.gz | 337.79 KB | 6ab1f5751d51e1150cae1d30a7eb0b50 |
| ENCFF909CTD.tabix.bed.gz.tbi | 110.09 KB | 9d453c20ac4b2e35727ba41e4e2aa657 |
| genomic_resource.yaml | 2.57 KB | a6f78f3d9c4b7b754fe8e8d43d7747bb |
| statistics/ |