Resource
| Id | TF_ChIP-seq/ENCSR000BIJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BIJ [biosample_summary="Homo sapiens GM12891" and target="SPI1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN442JLB|/analyses/ENCAN442JLB/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF744AGB|/files/ENCFF744AGB/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF482TVZ|/files/ENCFF482TVZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 13427665 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SPI1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF724WMD|/files/ENCFF724WMD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16501012 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SPI1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BIJ | float |
TF_ChIP-seq_ENCSR000BIJ |
TF_ChIP-seq ENCSR000BIJ [biosample_summary="Homo sapiens GM12891" and target="SPI1"]
|
 |
[4.76, 610] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11923183 | 0.37% | 53427 |
| chr1 | 1086936 | 0.44% | 4888 |
| chr1_KI270713v1_random | 480 | 1.18% | 2 |
| chr2 | 1009479 | 0.42% | 4519 |
| chr3 | 823169 | 0.42% | 3679 |
| chr4 | 560987 | 0.29% | 2515 |
| chr5 | 667530 | 0.37% | 2996 |
| chr6 | 812347 | 0.48% | 3645 |
| chr7 | 577334 | 0.36% | 2600 |
| chr8 | 537413 | 0.37% | 2417 |
| chr9 | 479918 | 0.35% | 2160 |
| chr10 | 568984 | 0.43% | 2534 |
| chr11 | 611548 | 0.45% | 2724 |
| chr12 | 641027 | 0.48% | 2881 |
| chr13 | 317317 | 0.28% | 1431 |
| chr14 | 396702 | 0.37% | 1767 |
| chr15 | 405356 | 0.40% | 1803 |
| chr16 | 387649 | 0.43% | 1731 |
| chr17 | 463913 | 0.56% | 2080 |
| chr17_GL000205v2_random | 720 | 0.39% | 3 |
| chr18 | 265266 | 0.33% | 1189 |
| chr19 | 356827 | 0.61% | 1594 |
| chr20 | 309905 | 0.48% | 1379 |
| chr21 | 120835 | 0.26% | 548 |
| chr22 | 217906 | 0.43% | 981 |
| chr22_KI270733v1_random | 240 | 0.13% | 1 |
| chrM | 240 | 1.45% | 1 |
| chrX | 288069 | 0.18% | 1290 |
| chrY | 15086 | 0.03% | 69 |
| 3338 contigs with no values (128654408 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 53427 | 5 | 414 | 223.17 | 240 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF744AGB.bed.gz | 902.4 KB | 8bb508bd4bb040c539b1c331dd860997 |
| ENCFF744AGB.tabix.bed.gz | 621.43 KB | 166e20db5a44626f757b10e9e6bf0da1 |
| ENCFF744AGB.tabix.bed.gz.tbi | 295.54 KB | 3561962f3bab930c2ca9a24d21932156 |
| genomic_resource.yaml | 2.52 KB | 0861ebb6990662e83ddc3903e9d8131a |
| statistics/ |