Resource
| Id | TF_ChIP-seq/ENCSR000BHP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BHP [biosample_summary="Homo sapiens HepG2" and target="FOSL2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN976NZN|/analyses/ENCAN976NZN/} has in progress subobject document {042b6c79-51c8-4817-94e6-4514660b7ada|/documents/042b6c79-51c8-4817-94e6-4514660b7ada/} audit_internal_action: Released analysis {ENCAN976NZN|/analyses/ENCAN976NZN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF736RWO|/files/ENCFF736RWO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13005909 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOSL2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF401HSI|/files/ENCFF401HSI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.49 and a self consistency ratio of 2.93. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BHP | float |
TF_ChIP-seq_ENCSR000BHP |
TF_ChIP-seq ENCSR000BHP [biosample_summary="Homo sapiens HepG2" and target="FOSL2"]
|
 |
[5.46, 469] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7217984 | 0.22% | 30800 |
| chr1 | 643028 | 0.26% | 2740 |
| chr2 | 786446 | 0.32% | 3365 |
| chr3 | 406424 | 0.20% | 1732 |
| chr4 | 222923 | 0.12% | 939 |
| chr5 | 294991 | 0.16% | 1258 |
| chr6 | 507846 | 0.30% | 2154 |
| chr7 | 305890 | 0.19% | 1318 |
| chr8 | 281532 | 0.19% | 1201 |
| chr9 | 266961 | 0.19% | 1132 |
| chr10 | 310591 | 0.23% | 1334 |
| chr11 | 329262 | 0.24% | 1420 |
| chr12 | 303752 | 0.23% | 1293 |
| chr13 | 124550 | 0.11% | 540 |
| chr14 | 246783 | 0.23% | 1063 |
| chr15 | 189420 | 0.19% | 807 |
| chr16 | 406350 | 0.45% | 1712 |
| chr17 | 455032 | 0.55% | 1943 |
| chr18 | 130905 | 0.16% | 554 |
| chr19 | 284651 | 0.49% | 1207 |
| chr20 | 370763 | 0.58% | 1578 |
| chr21 | 78130 | 0.17% | 338 |
| chr22 | 162351 | 0.32% | 704 |
| chrX | 106593 | 0.07% | 456 |
| chrY | 2810 | <0.01% | 12 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 30800 | 1 | 637 | 234.35 | 256 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF401HSI.bed.gz | 533.4 KB | 9906c7bcb5b3614c8c774bae6d6ba47f |
| ENCFF401HSI.tabix.bed.gz | 357.32 KB | 66dd40d120c536b5f1e1f5fb152adc60 |
| ENCFF401HSI.tabix.bed.gz.tbi | 180.52 KB | 4ab847482b68480cf7f46a77a69bcf51 |
| genomic_resource.yaml | 2.6 KB | 7ea498549e2239e4d944104b9231950e |
| statistics/ |