Resource

Id TF_ChIP-seq/ENCSR000BHKcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BHK [biosample_summary="Homo sapiens GM12878" and target="SP1"]
Description
Labels
  • accession: ENCSR000BHK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2013-09-13T15:59:05.474532-08:00
  • date_released: 2011-07-18
  • doi: 10.17989/ENCSR000BHK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: SP1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BHK float

TF_ChIP-seq_ENCSR000BHK

TF_ChIP-seq ENCSR000BHK [biosample_summary="Homo sapiens GM12878" and target="SP1"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BHK [2.62, 284]
n
4,346,257
mean
37.2
sd
36

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 43462570.14% 16361
chr1 412504 0.17% 1558
chr2 293597 0.12% 1096
chr3 224871 0.11% 845
chr4 131233 0.07% 487
chr5 192130 0.11% 719
chr6 254011 0.15% 959
chr7 203377 0.13% 778
chr8 163470 0.11% 622
chr9 179284 0.13% 669
chr10 174161 0.13% 652
chr11 228976 0.17% 876
chr12 223978 0.17% 850
chr13 79702 0.07% 292
chr14 148725 0.14% 543
chr15 146389 0.14% 565
chr16 201268 0.22% 755
chr17 265796 0.32% 994
chr18 72337 0.09% 262
chr19 366579 0.63% 1393
chr20 122541 0.19% 458
chr21 49545 0.11% 191
chr22 114328 0.22% 438
chrX 97455 0.06% 359
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 16361 1 839 265.65 320
global segment-length histogram

Files

Filename Size md5
ENCFF038AVV.bed.gz 251.68 KB fcca7ded01c938e22699c9a4cc127f56
ENCFF038AVV.tabix.bed.gz 189.84 KB 1c9a38a77f5b5d0603702a06a1a66ea5
ENCFF038AVV.tabix.bed.gz.tbi 107.17 KB e2bd59d95833e98ceefad82ccada3ab0
genomic_resource.yaml 1.83 KB 44c3e4610905c4509adc131318b3f90b
statistics/