type: position_score
table:
  filename: ENCFF707DWY.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000BHB
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000BHB [biosample_summary="Homo sapiens GM12878" and target="EP300"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000BHB [biosample_summary="Homo sapiens GM12878" and target="EP300"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN604RWD|/analyses/ENCAN604RWD/} has in progress\
    \ subobject document {4795c43b-6a44-4de7-9bf2-481e7ca44f02|/documents/4795c43b-6a44-4de7-9bf2-481e7ca44f02/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN604RWD|/analyses/ENCAN604RWD/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_not\\_compliant**: Processed alignments file {ENCFF569VGS|/files/ENCFF569VGS/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6278401 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ EP300-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _not\\_compliant**: Replicate concordance in ChIP-seq experiments is measured\
    \ by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed\
    \ IDR thresholded peaks files {ENCFF707DWY|/files/ENCFF707DWY/} processed by ChIP-seq\
    \ ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 2.09 and a self consistency\
    \ ratio of 10.21. According to ENCODE standards, having both rescue ratio and\
    \ self consistency ratio values < 2 is recommended, but having only one of the\
    \ ratio values < 2 is acceptable.\n\n**audit\\_warning**: Processed alignments\
    \ file {ENCFF119SSU|/files/ENCFF119SSU/} processed by ChIP-seq ENCODE4 v1.6.1\
    \ GRCh38 pipeline has 13614606 usable fragments. The minimum ENCODE standard for\
    \ each replicate in a ChIP-seq experiment targeting EP300-human and investigated\
    \ as a transcription factor is 10 million usable fragments. The recommended value\
    \ is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data\
    \ standards|/data-standards/chip-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000BHB
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens GM12878
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002784/
    perturbed: false
    doi: 10.17989/ENCSR000BHB
    date_created: '2013-09-13T15:58:25.673879-08:00'
    date_released: '2011-07-18'
    submitter_comment: ''
    target: EP300