Resource
| Id | TF_ChIP-seq/ENCSR000BHA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BHA [biosample_summary="Homo sapiens GM12878" and target="BCL11A"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN346LPY|/analyses/ENCAN346LPY/} has in progress subobject document {86a41aeb-7705-4242-a2de-55fafbd398fb|/documents/86a41aeb-7705-4242-a2de-55fafbd398fb/} audit_internal_action: Released analysis {ENCAN346LPY|/analyses/ENCAN346LPY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF148VRC|/files/ENCFF148VRC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13825260 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BCL11A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF692QYX|/files/ENCFF692QYX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14716025 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BCL11A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BHA | float |
TF_ChIP-seq_ENCSR000BHA |
TF_ChIP-seq ENCSR000BHA [biosample_summary="Homo sapiens GM12878" and target="BCL11A"]
|
 |
[4.03, 305] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 5262204 | 0.16% | 21601 |
| chr1 | 475966 | 0.19% | 1954 |
| chr2 | 451955 | 0.19% | 1855 |
| chr3 | 354465 | 0.18% | 1450 |
| chr4 | 246969 | 0.13% | 1015 |
| chr5 | 315698 | 0.17% | 1314 |
| chr6 | 377017 | 0.22% | 1557 |
| chr7 | 267704 | 0.17% | 1103 |
| chr8 | 242627 | 0.17% | 1004 |
| chr9 | 202390 | 0.15% | 816 |
| chr10 | 277103 | 0.21% | 1133 |
| chr11 | 241653 | 0.18% | 998 |
| chr12 | 263220 | 0.20% | 1085 |
| chr13 | 135648 | 0.12% | 551 |
| chr14 | 187645 | 0.18% | 763 |
| chr15 | 179321 | 0.18% | 735 |
| chr16 | 169940 | 0.19% | 696 |
| chr17 | 211708 | 0.25% | 863 |
| chr18 | 124958 | 0.16% | 503 |
| chr19 | 144975 | 0.25% | 591 |
| chr20 | 132421 | 0.21% | 543 |
| chr21 | 65060 | 0.14% | 269 |
| chr22 | 81607 | 0.16% | 336 |
| chrX | 112154 | 0.07% | 467 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 21601 | 3 | 830 | 243.61 | 270 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF824QXX.bed.gz | 346.46 KB | 9905ff1b38514164e11357822c3a4f88 |
| ENCFF824QXX.tabix.bed.gz | 250.38 KB | b4cc2377672199ff08b62982a591c24b |
| ENCFF824QXX.tabix.bed.gz.tbi | 136.11 KB | 9385a49a0daa4204bb54c77ae9a4572b |
| genomic_resource.yaml | 2.57 KB | 735cdc619949e7786e116de7182fd095 |
| statistics/ |