Resource
| Id | TF_ChIP-seq/ENCSR000BGY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BGY [biosample_summary="Homo sapiens GM12878" and target="IRF4"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN017YGY|/analyses/ENCAN017YGY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN017YGY|/analyses/ENCAN017YGY/} has in progress subobject document {b982bd57-f94a-4b68-b565-77d021ae978d|/documents/b982bd57-f94a-4b68-b565-77d021ae978d/} audit_warning: Processed alignments file {ENCFF948MVT|/files/ENCFF948MVT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14160264 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting IRF4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF700SGU|/files/ENCFF700SGU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16250508 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting IRF4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BGY | float |
TF_ChIP-seq_ENCSR000BGY |
TF_ChIP-seq ENCSR000BGY [biosample_summary="Homo sapiens GM12878" and target="IRF4"]
|
 |
[4.52, 376] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6695809 | 0.21% | 24055 |
| chr1 | 641657 | 0.26% | 2293 |
| chr2 | 542938 | 0.22% | 1965 |
| chr3 | 449785 | 0.23% | 1620 |
| chr4 | 286614 | 0.15% | 1030 |
| chr5 | 378140 | 0.21% | 1359 |
| chr6 | 478733 | 0.28% | 1725 |
| chr7 | 329217 | 0.21% | 1194 |
| chr8 | 293484 | 0.20% | 1054 |
| chr9 | 263781 | 0.19% | 938 |
| chr10 | 324907 | 0.24% | 1165 |
| chr11 | 323836 | 0.24% | 1196 |
| chr12 | 369766 | 0.28% | 1324 |
| chr13 | 158276 | 0.14% | 563 |
| chr14 | 207281 | 0.19% | 748 |
| chr15 | 236520 | 0.23% | 838 |
| chr16 | 235071 | 0.26% | 841 |
| chr17 | 298833 | 0.36% | 1089 |
| chr18 | 147843 | 0.18% | 533 |
| chr19 | 232994 | 0.40% | 813 |
| chr20 | 170858 | 0.27% | 612 |
| chr21 | 73176 | 0.16% | 261 |
| chr22 | 118895 | 0.23% | 424 |
| chrX | 133204 | 0.09% | 470 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 24055 | 2 | 487 | 278.35 | 320 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF113VGD.bed.gz | 361.8 KB | 4ba9d08ecd621659aae15735967dfd58 |
| ENCFF113VGD.tabix.bed.gz | 278.93 KB | b1a79ebae8915f3272bdc9666a8d0969 |
| ENCFF113VGD.tabix.bed.gz.tbi | 150.29 KB | 80ad7a7d2688a12f259c23e4f32945c6 |
| genomic_resource.yaml | 2.56 KB | b86ae1b3bd2b87f2168d532152f9bcc8 |
| statistics/ |