Resource
| Id | TF_ChIP-seq/ENCSR000BGW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BGW [biosample_summary="Homo sapiens K562" and target="SPI1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN069NTF|/analyses/ENCAN069NTF/} has in progress subobject document {90543621-7f30-4539-bcfe-a1532c449899|/documents/90543621-7f30-4539-bcfe-a1532c449899/} audit_internal_action: Released analysis {ENCAN069NTF|/analyses/ENCAN069NTF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF041NKM|/files/ENCFF041NKM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13748262 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SPI1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF410RKP|/files/ENCFF410RKP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12540391 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SPI1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF888CKG|/files/ENCFF888CKG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.35 and a self consistency ratio of 2.66. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BGW | float |
TF_ChIP-seq_ENCSR000BGW |
TF_ChIP-seq ENCSR000BGW [biosample_summary="Homo sapiens K562" and target="SPI1"]
|
 |
[4.25, 503] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6266851 | 0.19% | 32613 |
| chr1 | 761061 | 0.31% | 3965 |
| chr2 | 465890 | 0.19% | 2409 |
| chr3 | 379899 | 0.19% | 1977 |
| chr4 | 224818 | 0.12% | 1172 |
| chr5 | 305460 | 0.17% | 1590 |
| chr6 | 463697 | 0.27% | 2418 |
| chr7 | 365161 | 0.23% | 1892 |
| chr8 | 260823 | 0.18% | 1353 |
| chr9 | 219531 | 0.16% | 1146 |
| chr10 | 277897 | 0.21% | 1452 |
| chr11 | 328592 | 0.24% | 1715 |
| chr12 | 320979 | 0.24% | 1667 |
| chr13 | 83195 | 0.07% | 435 |
| chr14 | 145582 | 0.14% | 748 |
| chr15 | 210008 | 0.21% | 1095 |
| chr16 | 240487 | 0.27% | 1255 |
| chr17 | 293367 | 0.35% | 1535 |
| chr18 | 103144 | 0.13% | 536 |
| chr19 | 287142 | 0.49% | 1503 |
| chr20 | 167825 | 0.26% | 878 |
| chr21 | 73726 | 0.16% | 383 |
| chr22 | 134351 | 0.26% | 693 |
| chrX | 154216 | 0.10% | 796 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 32613 | 1 | 381 | 192.16 | 204 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF888CKG.bed.gz | 565.74 KB | a6a1ba063f289f92efba05b2b6901ad7 |
| ENCFF888CKG.tabix.bed.gz | 376.37 KB | 14bf4d51045119f9a830b271919a9e6f |
| ENCFF888CKG.tabix.bed.gz.tbi | 208.63 KB | f64a24094823de46be0420d7bb00f2f1 |
| genomic_resource.yaml | 3.09 KB | 6fd4ef06c2363707b75d162e329b8a5c |
| statistics/ |