Resource
| Id | TF_ChIP-seq/ENCSR000BGU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BGU [biosample_summary="Homo sapiens GM12878" and target="EBF1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN666UAJ|/analyses/ENCAN666UAJ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF336DPP|/files/ENCFF336DPP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12558030 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EBF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BGU | float |
TF_ChIP-seq_ENCSR000BGU |
TF_ChIP-seq ENCSR000BGU [biosample_summary="Homo sapiens GM12878" and target="EBF1"]
|
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[4.45, 511] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10072814 | 0.31% | 42710 |
| chr1 | 970532 | 0.39% | 4092 |
| chr2 | 747001 | 0.31% | 3191 |
| chr3 | 615113 | 0.31% | 2602 |
| chr4 | 353694 | 0.19% | 1497 |
| chr5 | 544686 | 0.30% | 2282 |
| chr6 | 597664 | 0.35% | 2553 |
| chr7 | 464270 | 0.29% | 1952 |
| chr8 | 419713 | 0.29% | 1771 |
| chr9 | 414363 | 0.30% | 1766 |
| chr10 | 492692 | 0.37% | 2077 |
| chr11 | 510126 | 0.38% | 2178 |
| chr12 | 468039 | 0.35% | 1988 |
| chr13 | 210210 | 0.18% | 894 |
| chr14 | 362628 | 0.34% | 1545 |
| chr15 | 362938 | 0.36% | 1546 |
| chr16 | 426053 | 0.47% | 1799 |
| chr17 | 538773 | 0.65% | 2290 |
| chr18 | 203000 | 0.25% | 866 |
| chr19 | 463715 | 0.79% | 1965 |
| chr20 | 300941 | 0.47% | 1263 |
| chr21 | 123248 | 0.26% | 523 |
| chr22 | 264501 | 0.52% | 1125 |
| chrX | 218914 | 0.14% | 945 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 42710 | 1 | 895 | 235.84 | 264 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF394DLH.bed.gz | 671.39 KB | 665d97b52ab2270bef1179c705616a9b |
| ENCFF394DLH.tabix.bed.gz | 493.71 KB | 8633b227b787452c208d11393738af36 |
| ENCFF394DLH.tabix.bed.gz.tbi | 212.01 KB | db8a568417dc319c12237784e3f584b1 |
| genomic_resource.yaml | 1.84 KB | c4b858fecd3425a7e3187573d083a0d5 |
| statistics/ |
