Resource
| Id | TF_ChIP-seq/ENCSR000BGO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BGO [biosample_summary="Homo sapiens HeLa-S3" and target="POLR2A"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF246QVY|/files/ENCFF246QVY/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN621XQP|/analyses/ENCAN621XQP/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF436YTR|/files/ENCFF436YTR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16618205 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF141DVZ|/files/ENCFF141DVZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18236066 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BGO | float |
TF_ChIP-seq_ENCSR000BGO |
TF_ChIP-seq ENCSR000BGO [biosample_summary="Homo sapiens HeLa-S3" and target="POLR2A"]
|
 |
[6.16, 529] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 15547552 | 0.48% | 39775 |
| chr1 | 1506742 | 0.61% | 3831 |
| chr1_KI270713v1_random | 369 | 0.91% | 1 |
| chr2 | 884253 | 0.37% | 2315 |
| chr3 | 936401 | 0.47% | 2348 |
| chr4 | 355203 | 0.19% | 954 |
| chr5 | 806897 | 0.44% | 1979 |
| chr6 | 825840 | 0.48% | 2010 |
| chr7 | 681398 | 0.43% | 1757 |
| chr8 | 627002 | 0.43% | 1662 |
| chr9 | 809112 | 0.58% | 2078 |
| chr10 | 600073 | 0.45% | 1547 |
| chr11 | 988288 | 0.73% | 2410 |
| chr12 | 903911 | 0.68% | 2235 |
| chr13 | 243150 | 0.21% | 645 |
| chr14 | 521702 | 0.49% | 1354 |
| chr15 | 592151 | 0.58% | 1449 |
| chr16 | 631534 | 0.70% | 1666 |
| chr17 | 985931 | 1.18% | 2534 |
| chr18 | 249702 | 0.31% | 633 |
| chr19 | 945915 | 1.61% | 2488 |
| chr20 | 501853 | 0.78% | 1358 |
| chr21 | 177864 | 0.38% | 472 |
| chr22 | 289485 | 0.57% | 812 |
| chrM | 8890 | 53.65% | 31 |
| chrX | 473886 | 0.30% | 1206 |
| 3341 contigs with no values (186247186 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 39775 | 1 | 6482 | 390.89 | 352 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF246QVY.bed.gz | 644.72 KB | 60c2b35b96e4bb623a68c317359893e9 |
| ENCFF246QVY.tabix.bed.gz | 460.33 KB | cda032adfe53b015e4594ccafa85e0a5 |
| ENCFF246QVY.tabix.bed.gz.tbi | 143.32 KB | 4eb0af78df467f7b68fd341e4929ce4a |
| genomic_resource.yaml | 2.53 KB | 16c24e7804a2c7ee959b69f352f7d67a |
| statistics/ |