Resource

Id TF_ChIP-seq/ENCSR000BGEcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BGE [biosample_summary="Homo sapiens GM12878" and target="SRF"]
Description
Labels
  • accession: ENCSR000BGE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2013-09-13T16:01:11.023868-08:00
  • date_released: 2011-07-18
  • doi: 10.17989/ENCSR000BGE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Fastq files ENCFF000OFM and ENCFF000OFK contain reads of mixed lengths. Read lengths followed by respective number of reads: ENCFF000OFM (25, 12547305), (36, 53224706); ENCFF000OFK (25, 13747457), (36, 46616535).
  • target: SRF

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BGE float

TF_ChIP-seq_ENCSR000BGE
TF_ChIP-seq ENCSR000BGE [biosample_summary="Homo sapiens GM12878" and target="SRF"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BGE [4.76, 524]
n
728,357
mean
58.4
sd
71.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 7283570.02% 3119
chr1 74181 0.03% 316
chr2 51474 0.02% 224
chr3 39133 0.02% 171
chr4 26548 0.01% 111
chr5 33137 0.02% 136
chr6 35931 0.02% 153
chr7 35029 0.02% 153
chr8 27465 0.02% 118
chr9 31310 0.02% 135
chr10 32590 0.02% 142
chr11 41361 0.03% 183
chr12 36493 0.03% 153
chr13 13393 0.01% 58
chr14 22042 0.02% 94
chr15 22172 0.02% 94
chr16 32288 0.04% 137
chr17 41460 0.05% 174
chr18 13565 0.02% 58
chr19 52822 0.09% 226
chr20 22776 0.04% 97
chr21 8193 0.02% 34
chr22 19991 0.04% 89
chrX 15003 0.01% 63
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 3119 4 740 233.52 250
global segment-length histogram

Files

Filename Size md5
ENCFF182IFE.bed.gz 54.2 KB ff130149520ea9b718f987e52d3e4370
ENCFF182IFE.tabix.bed.gz 37.72 KB dee0ca25ba6b290989181923fd7f68cc
ENCFF182IFE.tabix.bed.gz.tbi 33.82 KB 75b464b5b859be2875990e0efdf9c03f
genomic_resource.yaml 2.74 KB 2903a4dcbd12ac877bc1c1deb0f0e90c
statistics/