Resource

Id TF_ChIP-seq/ENCSR000AVEcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000AVE [biosample_summary="Homo sapiens K562" and target="WHSC1"]
Description
Labels
  • accession: ENCSR000AVE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002067/
  • biosample_summary: Homo sapiens K562
  • date_created: 2013-11-07T22:16:21.650202+00:00
  • date_released: 2012-08-06
  • doi: 10.17989/ENCSR000AVE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: WHSC1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000AVE float

TF_ChIP-seq_ENCSR000AVE

TF_ChIP-seq ENCSR000AVE [biosample_summary="Homo sapiens K562" and target="WHSC1"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000AVE [5.76, 65.7]
n
592,439
mean
23.8
sd
7.73

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 5924390.02% 2218
chr1 93295 0.04% 353
chr2 11850 <0.01% 43
chr3 21685 0.01% 75
chr4 7817 <0.01% 27
chr5 12845 0.01% 50
chr6 60114 0.04% 229
chr7 55769 0.03% 204
chr8 11080 0.01% 39
chr9 17543 0.01% 68
chr10 30788 0.02% 109
chr11 13522 0.01% 51
chr12 6284 <0.01% 22
chr13 608 <0.01% 2
chr14 2128 <0.01% 7
chr15 10686 0.01% 47
chr16 19167 0.02% 72
chr17 12488 0.01% 45
chr18 8992 0.01% 32
chr19 10243 0.02% 35
chr20 8762 0.01% 34
chr21 8913 0.02% 32
chr22 166141 0.33% 635
chrUn_KI270442v1 304 0.08% 1
chrX 1415 <0.01% 6
3342 contigs with no values (185912439 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 2218 5 304 267.11 304
global segment-length histogram

Files

Filename Size md5
ENCFF157ZQI.bed.gz 36.76 KB 1ba35432577e2284a365aab8265aab2a
ENCFF157ZQI.tabix.bed.gz 25.42 KB 228f3525566d5f62ddab8994ab05153e
ENCFF157ZQI.tabix.bed.gz.tbi 15.98 KB 5b004f6e1265cdb9df6add6cc02f856a
genomic_resource.yaml 1.54 KB 21b576c53339869bbbd1faecb14f8260
statistics/