Resource

Id TF_ChIP-seq/ENCSR000AVDcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000AVD [biosample_summary="Homo sapiens K562" and target="CHD7"]
Description
Labels
  • accession: ENCSR000AVD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002067/
  • biosample_summary: Homo sapiens K562
  • date_created: 2013-11-07T22:15:58.692641+00:00
  • date_released: 2012-08-06
  • doi: 10.17989/ENCSR000AVD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: CHD7

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000AVD float

TF_ChIP-seq_ENCSR000AVD
TF_ChIP-seq ENCSR000AVD [biosample_summary="Homo sapiens K562" and target="CHD7"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000AVD [3.46, 284]
n
295,805
mean
27.6
sd
39

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2958050.01% 1225
chr1 36283 0.01% 151
chr2 8278 <0.01% 34
chr3 10734 0.01% 43
chr4 7995 <0.01% 32
chr5 8421 <0.01% 35
chr6 25713 0.02% 107
chr7 36745 0.02% 153
chr8 6472 <0.01% 27
chr9 5835 <0.01% 24
chr10 6272 <0.01% 26
chr11 14468 0.01% 61
chr12 7610 0.01% 35
chr13 2248 <0.01% 9
chr14 2119 <0.01% 9
chr15 4279 <0.01% 17
chr16 10108 0.01% 40
chr17 11924 0.01% 51
chr18 2928 <0.01% 12
chr19 14418 0.02% 57
chr20 3276 0.01% 13
chr21 3840 0.01% 15
chr22 61233 0.12% 254
chrX 4606 <0.01% 20
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 1225 1 837 241.47 256
global segment-length histogram

Files

Filename Size md5
ENCFF722UJW.bed.gz 20.28 KB f9d7e0d4f7f3bd5c6d470cbfa3ff4d49
ENCFF722UJW.tabix.bed.gz 14.49 KB e407a435be96bdf4e784bf4e34d28847
ENCFF722UJW.tabix.bed.gz.tbi 13.99 KB ba8a4b0bbf8d8ae66d0469bebdc2d30d
genomic_resource.yaml 3.37 KB 2d8f07e0d77d40b30a0de20adce5b3e6
statistics/