Resource
| Id | TF_ChIP-seq/ENCSR000ARR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000ARR [biosample_summary="Homo sapiens astrocyte" and target="EZH2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN386LLN|/analyses/ENCAN386LLN/} has in progress subobject document {dd83aa67-b70c-4041-a528-69f1c1b578ea|/documents/dd83aa67-b70c-4041-a528-69f1c1b578ea/} audit_internal_action: Released analysis {ENCAN386LLN|/analyses/ENCAN386LLN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF941MJS|/files/ENCFF941MJS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 7166764 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EZH2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF039XTW|/files/ENCFF039XTW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF039XTW|/files/ENCFF039XTW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.15. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ARR | float |
TF_ChIP-seq_ENCSR000ARR |
TF_ChIP-seq ENCSR000ARR [biosample_summary="Homo sapiens astrocyte" and target="EZH2"]
|
 |
[6.24, 197] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7079856 | 0.22% | 14560 |
| chr1 | 678415 | 0.27% | 1401 |
| chr2 | 558377 | 0.23% | 1061 |
| chr3 | 306907 | 0.15% | 688 |
| chr4 | 302825 | 0.16% | 661 |
| chr5 | 327653 | 0.18% | 682 |
| chr6 | 342010 | 0.20% | 724 |
| chr7 | 399106 | 0.25% | 846 |
| chr8 | 276656 | 0.19% | 585 |
| chr9 | 347124 | 0.25% | 702 |
| chr10 | 394293 | 0.29% | 704 |
| chr11 | 390876 | 0.29% | 834 |
| chr12 | 322350 | 0.24% | 652 |
| chr13 | 149549 | 0.13% | 359 |
| chr14 | 217035 | 0.20% | 438 |
| chr15 | 238267 | 0.23% | 475 |
| chr16 | 248819 | 0.28% | 499 |
| chr17 | 503914 | 0.61% | 951 |
| chr18 | 121626 | 0.15% | 274 |
| chr19 | 371408 | 0.63% | 836 |
| chr20 | 262772 | 0.41% | 531 |
| chr21 | 73405 | 0.16% | 120 |
| chr22 | 163745 | 0.32% | 338 |
| chrX | 82724 | 0.05% | 199 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 14560 | 1 | 7579 | 486.25 | 348.5 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF262LQF.bed.gz | 248.09 KB | 4d623a409191864f1d11b18ef5aaeafe |
| ENCFF262LQF.tabix.bed.gz | 165.92 KB | 4f3744f356c3d2678f5c7fb7650671d2 |
| ENCFF262LQF.tabix.bed.gz.tbi | 48.77 KB | 1da8797d9c2eff49af8ca3cb0158e31d |
| genomic_resource.yaml | 3.39 KB | 94c1d4bea3c994b0999a9b0456a59bdf |
| statistics/ |