Resource

Id TF_ChIP-seq/ENCSR000AQUcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000AQU [biosample_summary="Homo sapiens DND-41" and target="CTCF"]
Description
Labels
  • accession: ENCSR000AQU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007074/
  • biosample_summary: Homo sapiens DND-41
  • date_created: 2013-11-07T22:16:08.910185+00:00
  • date_released: 2012-03-06
  • doi: 10.17989/ENCSR000AQU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: CTCF

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000AQU float

TF_ChIP-seq_ENCSR000AQU
TF_ChIP-seq ENCSR000AQU [biosample_summary="Homo sapiens DND-41" and target="CTCF"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000AQU [17.5, 547]
n
13,274,368
mean
120
sd
108

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 132743680.41% 50211
chr1 1260998 0.51% 4730
chr2 1040269 0.43% 3937
chr3 826365 0.42% 3156
chr4 593918 0.31% 2296
chr5 717977 0.40% 2724
chr6 713711 0.42% 2709
chr7 674371 0.42% 2561
chr8 562228 0.39% 2144
chr9 466840 0.34% 1782
chr10 626695 0.47% 2332
chr11 713904 0.53% 2657
chr12 658051 0.49% 2501
chr13 322278 0.28% 1234
chr14 478888 0.45% 1801
chr15 390321 0.38% 1505
chr16 463975 0.51% 1743
chr17 639140 0.77% 2367
chr18 284545 0.35% 1079
chr19 552832 0.94% 2053
chr20 430163 0.67% 1591
chr21 170772 0.37% 640
chr22 290829 0.57% 1079
chrX 375084 0.24% 1512
chrY 20214 0.04% 78
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50211 3 979 264.37 299
global segment-length histogram

Files

Filename Size md5
ENCFF002CDN.bed.gz 965.11 KB 8bdb862fa383b56d31bc25910d409bed
ENCFF002CDN.tabix.bed.gz 762.41 KB 9a07e988f5accab5efdd6649ed826d0b
ENCFF002CDN.tabix.bed.gz.tbi 307.55 KB ca53a31aa00bafe0ddb090bb0b40afd2
genomic_resource.yaml 1.47 KB 4f1acaa7d4aa86513153e5e9a116165d
statistics/