Resource

Id Histone_ChIP-seq/ENCSR996ENWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR996ENW [biosample_summary="Homo sapiens substantia nigra tissue female adult (75 years)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR996ENW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002038/
  • biosample_summary: Homo sapiens substantia nigra tissue female adult (75 years)
  • date_created: 2015-09-15T19:52:07.999368+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR996ENW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (75 years)
  • status: released
  • submitter_comment:
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR996ENW float

Histone_ChIP-seq_ENCSR996ENW
Histone_ChIP-seq ENCSR996ENW [biosample_summary="Homo sapiens substantia nigra tissue female adult (75 years)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR996ENW [1.78, 16.5]
n
35,175,750
mean
5.11
sd
1.54

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 351757501.09% 77854
chr1 3689327 1.48% 8009
chr2 2379836 0.98% 5616
chr3 1995693 1.01% 4539
chr4 1061432 0.56% 2658
chr5 1524647 0.84% 3627
chr6 1426402 0.84% 3325
chr7 1495251 0.94% 3484
chr8 1021666 0.70% 2470
chr9 1656228 1.20% 3590
chr10 1386828 1.04% 3299
chr11 2035391 1.51% 4395
chr12 2023036 1.52% 4320
chr13 554643 0.48% 1382
chr14 1225046 1.14% 2758
chr15 1265278 1.24% 2914
chr16 1893237 2.10% 3896
chr17 2360576 2.84% 4846
chr18 466295 0.58% 1174
chr19 2563083 4.37% 4880
chr20 1265580 1.96% 2668
chr21 405635 0.87% 908
chr22 1158315 2.28% 2313
chrX 322325 0.21% 783
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 77854 150 6556 451.82 357
global segment-length histogram

Files

Filename Size md5
ENCFF945TJD.bed.gz 1.46 MB fe7fd58458e28bb6db0ead4864f5daf9
ENCFF945TJD.tabix.bed.gz 751.61 KB ec3e6ec86933d828634497977505d83c
ENCFF945TJD.tabix.bed.gz.tbi 159.75 KB 49b160881371c749f36f2ba274c6800b
genomic_resource.yaml 2.03 KB 81ba2e82b6f6d8e4a4a31228c1b458dc
statistics/