Resource
| Id | Histone_ChIP-seq/ENCSR994BPD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR994BPD [biosample_summary="Homo sapiens kidney tissue male adult (50 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (50 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN997YHW|/analyses/ENCAN997YHW/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF318GKZ|/files/ENCFF318GKZ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 24124110 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR994BPD | float |
Histone_ChIP-seq_ENCSR994BPD |
Histone_ChIP-seq ENCSR994BPD [biosample_summary="Homo sapiens kidney tissue male adult (50 years)" and target="H3K4me1"]
|
 |
[1.76, 12.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 42793904 | 1.33% | 60551 |
| chr1 | 4531842 | 1.82% | 6269 |
| chr2 | 3516373 | 1.45% | 5010 |
| chr3 | 2965730 | 1.50% | 4204 |
| chr4 | 1919703 | 1.01% | 2795 |
| chr5 | 2386439 | 1.31% | 3423 |
| chr6 | 2380461 | 1.39% | 3524 |
| chr7 | 1784780 | 1.12% | 2592 |
| chr8 | 1625168 | 1.12% | 2395 |
| chr9 | 2164280 | 1.56% | 2926 |
| chr10 | 2235737 | 1.67% | 3128 |
| chr11 | 2321447 | 1.72% | 3256 |
| chr12 | 2080676 | 1.56% | 3032 |
| chr13 | 1116683 | 0.98% | 1582 |
| chr14 | 1563655 | 1.46% | 2172 |
| chr15 | 1511820 | 1.48% | 2098 |
| chr16 | 1472968 | 1.63% | 2108 |
| chr17 | 2222263 | 2.67% | 3005 |
| chr18 | 924599 | 1.15% | 1270 |
| chr19 | 1140214 | 1.95% | 1599 |
| chr20 | 1131811 | 1.76% | 1560 |
| chr21 | 427529 | 0.92% | 636 |
| chr22 | 1026429 | 2.02% | 1369 |
| chrX | 332851 | 0.21% | 578 |
| chrY | 10446 | 0.02% | 20 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 60551 | 220 | 8948 | 706.74 | 583 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF955PYL.bed.gz | 1.22 MB | efb9591015cf6e5703553633a4f9bee1 |
| ENCFF955PYL.tabix.bed.gz | 617.8 KB | 8bb23b40bfaea86fcd8de3dc0c571c43 |
| ENCFF955PYL.tabix.bed.gz.tbi | 221.22 KB | 32e9e5b65eaac08252345766bbaa56a7 |
| genomic_resource.yaml | 1.98 KB | 50442d096942392a736835a948a34e3d |
| statistics/ |