Resource

Id Histone_ChIP-seq/ENCSR985MIBcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR985MIB [biosample_summary="Homo sapiens MCF-7" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR985MIB
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001203/
  • biosample_summary: Homo sapiens MCF-7
  • date_created: 2014-02-20T05:42:13.351654+00:00
  • date_released: 2016-08-05
  • doi: 10.17989/ENCSR985MIB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR985MIB float

Histone_ChIP-seq_ENCSR985MIB
Histone_ChIP-seq ENCSR985MIB [biosample_summary="Homo sapiens MCF-7" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR985MIB [1.37, 78.5]
n
51,410,804
mean
28.7
sd
17

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 514108041.60% 37900
chr1 4824171 1.94% 3430
chr1_KI270712v1_random 768 0.44% 2
chr1_KI270713v1_random 899 2.21% 3
chr2 3680419 1.52% 2814
chr3 2910555 1.47% 2237
chr4 1968771 1.04% 1465
chr5 2461180 1.36% 1847
chr5_GL000208v1_random 346 0.37% 1
chr6 3129024 1.83% 2293
chr7 2441457 1.53% 1926
chr8 2048149 1.41% 1571
chr9 2139915 1.55% 1554
chr10 2336016 1.75% 1793
chr11 2535864 1.88% 1714
chr12 2728130 2.05% 1952
chr13 1048764 0.92% 820
chr14 1853102 1.73% 1291
chr15 1739051 1.71% 1285
chr16 2171081 2.40% 1535
chr17 2957413 3.55% 2035
chr17_GL000205v2_random 2428 1.31% 3
chr18 768279 0.96% 608
chr19 2974297 5.07% 2131
chr20 1554819 2.41% 1199
chr21 616968 1.32% 511
chr22 996075 1.96% 771
chrUn_GL000195v1 373 0.20% 1
chrUn_GL000219v1 1441 0.80% 2
chrUn_GL000220v1 577 0.36% 2
chrUn_KI270442v1 810 0.21% 2
chrUn_KI270467v1 382 9.74% 1
chrX 1519280 0.97% 1101
3334 contigs with no values (184889555 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37900 195 23063 1356.49 886
global segment-length histogram

Files

Filename Size md5
ENCFF625APE.bed.gz 1019.45 KB 0eb56f05ac7cb4a3d1fd5ced0b2d07c5
ENCFF625APE.tabix.bed.gz 430.92 KB fe8ec999e0a1409740c6241a29c19f15
ENCFF625APE.tabix.bed.gz.tbi 205.23 KB b723845c744c3e5ec4695729ea28eec5
genomic_resource.yaml 1.86 KB 2959556837eed3ed25e44a7df021cf10
statistics/