Resource
| Id | Histone_ChIP-seq/ENCSR980ZJN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR980ZJN [biosample_summary="Homo sapiens BLaER1 24 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: 24 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1 output_type: peaks audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-joint-replicate-peak-calling-step-v-1|/analysis-steps/crg-chip-seq-joint-replicate-peak-calling-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-alignment-and-filtering-step-v-1|/analysis-steps/crg-chip-seq-alignment-and-filtering-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-bed-to-bigbed-conversion-step-v-1|/analysis-steps/crg-chip-seq-bed-to-bigbed-conversion-step-v-1/} audit_internal_action: Released pipeline {ENCPL436CSM|/pipelines/ENCPL436CSM/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} audit_internal_action: Released analysis step version {crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0|/analysis-step-versions/crg-chip-seq-peak-calling-and-signal-generation-step-v-1-0/} has in progress subobject analysis step {crg-chip-seq-peak-calling-and-signal-generation-step-v-1|/analysis-steps/crg-chip-seq-peak-calling-and-signal-generation-step-v-1/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR980ZJN | float |
Histone_ChIP-seq_ENCSR980ZJN |
Histone_ChIP-seq ENCSR980ZJN [biosample_summary="Homo sapiens BLaER1 24 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H4K20me1"]
|
 |
[1.28, 23.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 132693739 | 4.12% | 126263 |
| chr1 | 12729610 | 5.11% | 12191 |
| chr2 | 9901910 | 4.09% | 9355 |
| chr3 | 7481264 | 3.77% | 7727 |
| chr4 | 4671140 | 2.46% | 4921 |
| chr5 | 6481864 | 3.57% | 6358 |
| chr6 | 5561638 | 3.26% | 5539 |
| chr7 | 7451268 | 4.68% | 7538 |
| chr8 | 6659585 | 4.59% | 5429 |
| chr9 | 5643326 | 4.08% | 5597 |
| chr10 | 6770872 | 5.06% | 6502 |
| chr11 | 6078471 | 4.50% | 5775 |
| chr12 | 6479757 | 4.86% | 6009 |
| chr13 | 2725635 | 2.38% | 2689 |
| chr14 | 4055007 | 3.79% | 4090 |
| chr14_GL000194v1_random | 2537 | 1.33% | 7 |
| chr15 | 4492428 | 4.40% | 4248 |
| chr16 | 6616851 | 7.32% | 5823 |
| chr17 | 8032328 | 9.65% | 7481 |
| chr18 | 2190780 | 2.73% | 2503 |
| chr19 | 6305863 | 10.76% | 4983 |
| chr20 | 3985374 | 6.18% | 3476 |
| chr21 | 1695042 | 3.63% | 1481 |
| chr22 | 4157169 | 8.18% | 3540 |
| chr22_KI270733v1_random | 277 | 0.15% | 1 |
| chrUn_GL000195v1 | 734 | 0.40% | 2 |
| chrUn_GL000219v1 | 4641 | 2.59% | 5 |
| chrUn_KI270438v1 | 2884 | 2.56% | 4 |
| chrX | 2515484 | 1.61% | 2989 |
| 3338 contigs with no values (185458660 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 126263 | 250 | 90287 | 1050.93 | 468 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF526TDN.bed.gz | 2.4 MB | 3566b9b5a740bc7bb791bf8e176cb7e7 |
| ENCFF526TDN.tabix.bed.gz | 1.19 MB | 7b2227465584a4545513397cabee4ed0 |
| ENCFF526TDN.tabix.bed.gz.tbi | 162.16 KB | 772dffe3db4dccd0bccfe35b6854b75f |
| genomic_resource.yaml | 3.12 KB | defd9e03dd02107277a58bbe11e9523b |
| statistics/ |