Resource
| Id | Histone_ChIP-seq/ENCSR978CNH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR978CNH [biosample_summary="Homo sapiens SK-N-SH" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN161AOW|/analyses/ENCAN161AOW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF665FGA|/files/ENCFF665FGA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 27493348 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF488ETS|/files/ENCFF488ETS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 21149701 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR978CNH | float |
Histone_ChIP-seq_ENCSR978CNH |
Histone_ChIP-seq ENCSR978CNH [biosample_summary="Homo sapiens SK-N-SH" and target="H3K36me3"]
|
 |
[1.56, 9.22] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 142129700 | 4.42% | 148170 |
| chr1 | 13952072 | 5.60% | 14500 |
| chr1_KI270711v1_random | 1332 | 3.16% | 1 |
| chr2 | 13188833 | 5.45% | 13248 |
| chr3 | 9907122 | 5.00% | 10531 |
| chr4 | 7106120 | 3.74% | 7564 |
| chr5 | 8710914 | 4.80% | 8635 |
| chr6 | 6791026 | 3.98% | 7469 |
| chr7 | 9026638 | 5.66% | 8674 |
| chr8 | 5253497 | 3.62% | 5640 |
| chr9 | 5789366 | 4.18% | 6312 |
| chr9_KI270720v1_random | 2557 | 6.55% | 6 |
| chr10 | 6382156 | 4.77% | 6813 |
| chr11 | 6727242 | 4.98% | 6979 |
| chr12 | 7827343 | 5.87% | 8300 |
| chr13 | 3879414 | 3.39% | 4169 |
| chr14 | 4663785 | 4.36% | 4843 |
| chr14_GL000225v1_random | 768 | 0.36% | 1 |
| chr14_KI270722v1_random | 648 | 0.33% | 1 |
| chr14_KI270726v1_random | 368 | 0.84% | 1 |
| chr15 | 5825163 | 5.71% | 5923 |
| chr16 | 4167672 | 4.61% | 4437 |
| chr17 | 7308801 | 8.78% | 7213 |
| chr17_GL000205v2_random | 1210 | 0.65% | 2 |
| chr18 | 2638985 | 3.28% | 2776 |
| chr19 | 4952378 | 8.45% | 4899 |
| chr20 | 2927423 | 4.54% | 3279 |
| chr21 | 1341905 | 2.87% | 1423 |
| chr22 | 1521405 | 2.99% | 1768 |
| chrUn_GL000195v1 | 4808 | 2.63% | 8 |
| chrUn_GL000219v1 | 11632 | 6.49% | 14 |
| chrUn_KI270337v1 | 255 | 22.75% | 1 |
| chrUn_KI270466v1 | 359 | 29.12% | 1 |
| chrUn_KI270467v1 | 1161 | 29.62% | 2 |
| chrUn_KI270742v1 | 348 | 0.19% | 1 |
| chrUn_KI270744v1 | 266 | 0.16% | 1 |
| chrX | 2214384 | 1.42% | 2734 |
| chrY | 344 | <0.01% | 1 |
| 3329 contigs with no values (127637693 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 148170 | 210 | 40278 | 959.23 | 669 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF140RVM.bed.gz | 3.41 MB | 84e87da475c850b3d7be6415d4048b28 |
| ENCFF140RVM.tabix.bed.gz | 1.52 MB | 1069efd5ab9f80eb0d6b6a08a594766f |
| ENCFF140RVM.tabix.bed.gz.tbi | 199.33 KB | 977d3e6e25606e602fca44f79280af9b |
| genomic_resource.yaml | 2.56 KB | a76f15453ac267f0f0f81ca50c063f99 |
| statistics/ |