Resource

Id Histone_ChIP-seq/ENCSR975RSDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR975RSD [biosample_summary="Homo sapiens substantia nigra tissue female adult (75 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR975RSD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002038/
  • biosample_summary: Homo sapiens substantia nigra tissue female adult (75 years)
  • date_created: 2015-09-15T19:52:09.463564+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR975RSD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (75 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR975RSD float

Histone_ChIP-seq_ENCSR975RSD
Histone_ChIP-seq ENCSR975RSD [biosample_summary="Homo sapiens substantia nigra tissue female adult (75 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR975RSD [1.79, 15.6]
n
10,297,641
mean
4.7
sd
1.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 102976410.32% 28965
chr1 650450 0.26% 1935
chr2 732158 0.30% 2189
chr3 554734 0.28% 1693
chr4 641255 0.34% 1873
chr5 709145 0.39% 1972
chr6 477977 0.28% 1478
chr7 542035 0.34% 1567
chr8 455942 0.31% 1416
chr9 397639 0.29% 1089
chr10 444390 0.33% 1280
chr11 425199 0.31% 1321
chr12 574983 0.43% 1527
chr13 251315 0.22% 779
chr14 269298 0.25% 822
chr15 264771 0.26% 689
chr16 333136 0.37% 895
chr17 203412 0.24% 557
chr18 201664 0.25% 620
chr19 1245275 2.12% 2316
chr20 181014 0.28% 539
chr21 133836 0.29% 399
chr22 101448 0.20% 300
chrX 506565 0.32% 1709
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 28965 135 21533 355.52 290
global segment-length histogram

Files

Filename Size md5
ENCFF025HQM.bed.gz 518.04 KB 6a09b3e98c701a5f33332eaddcccef6d
ENCFF025HQM.tabix.bed.gz 272.97 KB 29daf3baf0d3b692c779438b093e6fa8
ENCFF025HQM.tabix.bed.gz.tbi 171.29 KB d58cbd762a5cc5e811701f204b8d3ebc
genomic_resource.yaml 1.52 KB 90b3686fc0a3101202912e9c40b6aa5c
statistics/