Resource
| Id | Histone_ChIP-seq/ENCSR975GZA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR975GZA [biosample_summary="Homo sapiens SK-N-SH" and target="H3K4me3"] |
| Description |
status: archived biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN426SRI|/analyses/ENCAN426SRI/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF709DML|/files/ENCFF709DML/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19584151 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF107OBT|/files/ENCFF107OBT/} processed by ChIP-seq ENCODE3 hg19 pipeline has 13604215 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR975GZA | float |
Histone_ChIP-seq_ENCSR975GZA |
Histone_ChIP-seq ENCSR975GZA [biosample_summary="Homo sapiens SK-N-SH" and target="H3K4me3"]
|
 |
[1.7, 38.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 47133195 | 1.46% | 42010 |
| chr1 | 4541953 | 1.82% | 3947 |
| chr2 | 3359843 | 1.39% | 3022 |
| chr3 | 2755761 | 1.39% | 2430 |
| chr4 | 2201390 | 1.16% | 2106 |
| chr5 | 2466602 | 1.36% | 2184 |
| chr6 | 2835199 | 1.66% | 2512 |
| chr7 | 2465962 | 1.55% | 2208 |
| chr8 | 1853502 | 1.28% | 1760 |
| chr9 | 1929848 | 1.39% | 1775 |
| chr10 | 2010602 | 1.50% | 1864 |
| chr11 | 2472163 | 1.83% | 2128 |
| chr12 | 2508668 | 1.88% | 2213 |
| chr13 | 1060236 | 0.93% | 1037 |
| chr14 | 1519394 | 1.42% | 1314 |
| chr15 | 1520664 | 1.49% | 1328 |
| chr16 | 1748025 | 1.93% | 1501 |
| chr17 | 2533324 | 3.04% | 2064 |
| chr18 | 842983 | 1.05% | 852 |
| chr19 | 2596841 | 4.43% | 2151 |
| chr20 | 1133807 | 1.76% | 1055 |
| chr21 | 477530 | 1.02% | 456 |
| chr22 | 884611 | 1.74% | 798 |
| chrX | 1413617 | 0.91% | 1303 |
| chrY | 670 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 42010 | 200 | 20188 | 1121.95 | 674 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF363ZFM.bed.gz | 1.08 MB | eff0dfdb742a5a879e6226cf42245cf3 |
| ENCFF363ZFM.tabix.bed.gz | 473.23 KB | e63dcf15bfeeb0c236ca1a66c55fff61 |
| ENCFF363ZFM.tabix.bed.gz.tbi | 234.28 KB | 684e808d8ed3546f7baa694a9dfbf5d8 |
| genomic_resource.yaml | 2.36 KB | 931e56450999786b46ec78496a90f387 |
| statistics/ |