Resource
| Id | Histone_ChIP-seq/ENCSR974EGY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR974EGY [biosample_summary="Homo sapiens T-cell" and target="H3K9me3"] |
| Description |
status: archived biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN643XIA|/analyses/ENCAN643XIA/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted unfiltered alignments file {ENCFF011XBL|/files/ENCFF011XBL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 5799247 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted unfiltered alignments file {ENCFF232EVT|/files/ENCFF232EVT/} processed by ChIP-seq ENCODE3 hg19 pipeline has 6341644 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR974EGY | float |
Histone_ChIP-seq_ENCSR974EGY |
Histone_ChIP-seq ENCSR974EGY [biosample_summary="Homo sapiens T-cell" and target="H3K9me3"]
|
 |
[1.75, 15.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6415103 | 0.20% | 32283 |
| chr1 | 338294 | 0.14% | 1740 |
| chr2 | 471129 | 0.19% | 2482 |
| chr3 | 369706 | 0.19% | 2044 |
| chr4 | 451367 | 0.24% | 2427 |
| chr5 | 420402 | 0.23% | 2326 |
| chr6 | 315385 | 0.18% | 1717 |
| chr7 | 374733 | 0.24% | 1838 |
| chr8 | 234914 | 0.16% | 1261 |
| chr9 | 231747 | 0.17% | 1197 |
| chr10 | 296319 | 0.22% | 1365 |
| chr11 | 251728 | 0.19% | 1368 |
| chr12 | 303786 | 0.23% | 1490 |
| chr13 | 221388 | 0.19% | 1284 |
| chr14 | 192231 | 0.18% | 1066 |
| chr15 | 143040 | 0.14% | 726 |
| chr16 | 259448 | 0.29% | 1170 |
| chr17 | 104460 | 0.13% | 536 |
| chr18 | 94538 | 0.12% | 510 |
| chr19 | 881699 | 1.50% | 3388 |
| chr20 | 67668 | 0.11% | 333 |
| chr21 | 151588 | 0.32% | 670 |
| chr22 | 41719 | 0.08% | 196 |
| chrX | 174627 | 0.11% | 1052 |
| chrY | 23187 | 0.04% | 97 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 32283 | 120 | 3086 | 198.71 | 164 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF234RFS.bed.gz | 501.48 KB | 86fe6ae3c773d682706ad3954150381e |
| ENCFF234RFS.tabix.bed.gz | 270.68 KB | c077b7fc47d05b68d33027513a2f7015 |
| ENCFF234RFS.tabix.bed.gz.tbi | 156.36 KB | cb1c7d4cdf045b1f3200f236415d5021 |
| genomic_resource.yaml | 2.46 KB | 3b528905b367e294a6bc1507045feeae |
| statistics/ |