Resource
| Id | Histone_ChIP-seq/ENCSR972NUZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR972NUZ [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN553NIJ|/analyses/ENCAN553NIJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF475KSM|/files/ENCFF475KSM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 27339570 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR972NUZ | float |
Histone_ChIP-seq_ENCSR972NUZ |
Histone_ChIP-seq ENCSR972NUZ [biosample_summary="Homo sapiens foreskin melanocyte male newborn" and target="H3K4me1"]
|
 |
[1.59, 20.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 190550099 | 5.92% | 171924 |
| chr1 | 18167149 | 7.30% | 16117 |
| chr1_KI270712v1_random | 2371 | 1.35% | 4 |
| chr1_KI270713v1_random | 2107 | 5.17% | 3 |
| chr1_KI270714v1_random | 373 | 0.89% | 1 |
| chr2 | 16153604 | 6.67% | 14596 |
| chr3 | 12335579 | 6.22% | 11506 |
| chr4 | 9507653 | 5.00% | 9177 |
| chr5 | 10875111 | 5.99% | 9974 |
| chr6 | 12038301 | 7.05% | 11036 |
| chr7 | 9684968 | 6.08% | 9137 |
| chr8 | 8408267 | 5.79% | 7616 |
| chr9 | 8297612 | 6.00% | 7427 |
| chr10 | 9372403 | 7.00% | 8227 |
| chr11 | 9959293 | 7.37% | 8469 |
| chr12 | 10022649 | 7.52% | 8857 |
| chr13 | 5276022 | 4.61% | 5047 |
| chr14 | 6054420 | 5.66% | 5470 |
| chr15 | 7104872 | 6.97% | 6091 |
| chr16 | 5747688 | 6.36% | 5017 |
| chr17 | 8738068 | 10.50% | 7096 |
| chr17_GL000205v2_random | 2515 | 1.36% | 2 |
| chr18 | 4160320 | 5.18% | 3777 |
| chr19 | 5516064 | 9.41% | 4739 |
| chr20 | 4774857 | 7.41% | 4194 |
| chr21 | 2068561 | 4.43% | 1883 |
| chr22 | 3352555 | 6.60% | 2809 |
| chrUn_GL000195v1 | 4604 | 2.52% | 5 |
| chrUn_GL000219v1 | 1315 | 0.73% | 2 |
| chrUn_GL000220v1 | 296 | 0.18% | 1 |
| chrX | 2836079 | 1.82% | 3539 |
| chrY | 84423 | 0.15% | 105 |
| 3335 contigs with no values (128109093 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 171924 | 195 | 27406 | 1108.34 | 826 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF864LKI.bed.gz | 3.96 MB | ceaae029b2112c898b9ed93d4027ed69 |
| ENCFF864LKI.tabix.bed.gz | 1.76 MB | 4db0b852e644c069443e713fd8907e57 |
| ENCFF864LKI.tabix.bed.gz.tbi | 408.71 KB | 9ded26b41f0e2b6d21d8d12c0c641ee2 |
| genomic_resource.yaml | 1.95 KB | 22a413a9d1b860807ea95f02ed0049a1 |
| statistics/ |