Resource

Id Histone_ChIP-seq/ENCSR963HARcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR963HAR [biosample_summary="Homo sapiens Karpas-422" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR963HAR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005719/
  • biosample_summary: Homo sapiens Karpas-422
  • date_created: 2014-02-20T05:10:14.860111+00:00
  • date_released: 2014-07-11
  • doi: 10.17989/ENCSR963HAR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR963HAR float

Histone_ChIP-seq_ENCSR963HAR
Histone_ChIP-seq ENCSR963HAR [biosample_summary="Homo sapiens Karpas-422" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR963HAR [1.47, 4.59]
n
4,040,266
mean
2.67
sd
0.368

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 40402660.13% 13173
chr1 291610 0.12% 956
chr2 413204 0.17% 1366
chr3 273769 0.14% 901
chr4 197639 0.10% 641
chr5 194103 0.11% 663
chr6 217312 0.13% 735
chr7 187521 0.12% 631
chr8 183946 0.13% 615
chr9 144269 0.10% 479
chr10 163439 0.12% 541
chr11 323052 0.24% 981
chr12 166136 0.12% 548
chr13 120050 0.10% 406
chr14 339676 0.32% 1045
chr15 124100 0.12% 413
chr16 96963 0.11% 315
chr17 118129 0.14% 368
chr18 129650 0.16% 422
chr19 74394 0.13% 234
chr20 111839 0.17% 352
chr21 46070 0.10% 152
chr22 45959 0.09% 139
chrX 77436 0.05% 270
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 13173 195 1353 306.71 281
global segment-length histogram

Files

Filename Size md5
ENCFF634SON.bed.gz 254.95 KB 73db11692ea32ff9505a9332897ede1b
ENCFF634SON.tabix.bed.gz 133.88 KB b95443e21b0cea9cc7f08f679aaac0f2
ENCFF634SON.tabix.bed.gz.tbi 106.12 KB 629ebf1819a6c1ce5bf7439c25d24f0e
genomic_resource.yaml 1.38 KB b53e18f3e8a96c0144077d954a92f600
statistics/