Resource

Id Histone_ChIP-seq/ENCSR962MYXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR962MYX [biosample_summary="Homo sapiens vagina tissue female adult (53 years)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR962MYX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000996/
  • biosample_summary: Homo sapiens vagina tissue female adult (53 years)
  • date_created: 2017-01-24T04:30:46.809662+00:00
  • date_released: 2017-01-30
  • doi: 10.17989/ENCSR962MYX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment: The lab has submitted new control fastqs, prompting new peak and signal calls for its downstream experiments.
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR962MYX float

Histone_ChIP-seq_ENCSR962MYX
Histone_ChIP-seq ENCSR962MYX [biosample_summary="Homo sapiens vagina tissue female adult (53 years)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR962MYX [1.31, 6.83]
n
813,589
mean
3.43
sd
0.601

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 8135890.03% 4301
chr1 73347 0.03% 401
chr2 56572 0.02% 319
chr3 45570 0.02% 251
chr4 28874 0.02% 165
chr5 41068 0.02% 228
chr6 31075 0.02% 177
chr7 36459 0.02% 191
chr8 21741 0.01% 121
chr9 35066 0.03% 195
chr10 35769 0.03% 192
chr11 35053 0.03% 188
chr12 53837 0.04% 270
chr13 14282 0.01% 79
chr14 25253 0.02% 137
chr15 24226 0.02% 140
chr16 28491 0.03% 147
chr17 37567 0.05% 213
chr18 11993 0.01% 67
chr19 122191 0.21% 515
chr20 22537 0.03% 125
chr21 7458 0.02% 40
chr22 17969 0.04% 97
chrM 1327 8.01% 7
chrX 5864 <0.01% 36
3342 contigs with no values (186287931 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 4301 100 1263 189.16 166
global segment-length histogram

Files

Filename Size md5
ENCFF270TPE.bed.gz 77.06 KB f6fad002ce3a5cf80e635a70d5419460
ENCFF270TPE.tabix.bed.gz 43.04 KB 94879fd34d31af6e01c97f3832601695
ENCFF270TPE.tabix.bed.gz.tbi 38.95 KB 78a2fc61f60b9a34678d7a97303b971d
genomic_resource.yaml 1.61 KB 68e41a294eb39116d42e592d489a33ff
statistics/