Resource
| Id | Histone_ChIP-seq/ENCSR960AAL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR960AAL [biosample_summary="Homo sapiens sigmoid colon tissue male adult (37 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN732ZTT|/analyses/ENCAN732ZTT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN732ZTT|/analyses/ENCAN732ZTT/} has in progress subobject document {714f4f3f-1ee9-42e3-a6b0-3efaf79c5b6d|/documents/714f4f3f-1ee9-42e3-a6b0-3efaf79c5b6d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF204KGR|/files/ENCFF204KGR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR960AAL | float |
Histone_ChIP-seq_ENCSR960AAL |
Histone_ChIP-seq ENCSR960AAL [biosample_summary="Homo sapiens sigmoid colon tissue male adult (37 years)" and target="H3K4me3"]
|
 |
[2.27, 83.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49108913 | 1.53% | 28618 |
| chr1 | 4835415 | 1.94% | 2808 |
| chr2 | 3415456 | 1.41% | 1978 |
| chr3 | 2810058 | 1.42% | 1578 |
| chr4 | 2093421 | 1.10% | 1182 |
| chr5 | 2292973 | 1.26% | 1311 |
| chr6 | 2749885 | 1.61% | 1566 |
| chr7 | 2494093 | 1.57% | 1480 |
| chr8 | 1846517 | 1.27% | 1123 |
| chr9 | 2123195 | 1.53% | 1273 |
| chr10 | 2194134 | 1.64% | 1320 |
| chr11 | 2591404 | 1.92% | 1436 |
| chr12 | 2592316 | 1.95% | 1443 |
| chr13 | 1033528 | 0.90% | 634 |
| chr14 | 1565389 | 1.46% | 884 |
| chr15 | 1579115 | 1.55% | 924 |
| chr16 | 1899209 | 2.10% | 1147 |
| chr17 | 2793319 | 3.36% | 1585 |
| chr18 | 868121 | 1.08% | 546 |
| chr19 | 2958142 | 5.05% | 1793 |
| chr20 | 1290137 | 2.00% | 763 |
| chr21 | 491150 | 1.05% | 309 |
| chr22 | 1092198 | 2.15% | 661 |
| chrX | 1448846 | 0.93% | 849 |
| chrY | 50892 | 0.09% | 25 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 28618 | 223 | 24693 | 1716.01 | 1395 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF250ZHO.bed.gz | 805.43 KB | dd348616a266c16bdcc0965eb8c9e1b2 |
| ENCFF250ZHO.tabix.bed.gz | 339.0 KB | 7fb98975ebfb297d95b99153ed6a829a |
| ENCFF250ZHO.tabix.bed.gz.tbi | 179.81 KB | c89a61e9e10f70a3c95ad8cbebbf185b |
| genomic_resource.yaml | 2.36 KB | c8045a683e59252f57bd598ee7d8e162 |
| statistics/ |