Resource

Id Histone_ChIP-seq/ENCSR957YLXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR957YLX [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR957YLX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years)
  • date_created: 2021-01-28T04:10:55.201851+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR957YLX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (87 years) with Alzheimer's disease, Cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR957YLX float

Histone_ChIP-seq_ENCSR957YLX
Histone_ChIP-seq ENCSR957YLX [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR957YLX [1.72, 10.8]
n
37,515,740
mean
4.16
sd
1.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 375157401.17% 53837
chr1 1273988 0.51% 1561
chr2 1299715 0.54% 1506
chr3 492091 0.25% 583
chr4 795693 0.42% 869
chr5 1015413 0.56% 1067
chr6 1410766 0.83% 1395
chr7 1015887 0.64% 982
chr8 701636 0.48% 861
chr9 563439 0.41% 618
chr10 1061782 0.79% 1281
chr11 584951 0.43% 760
chr12 830605 0.62% 929
chr13 473488 0.41% 558
chr14 918819 0.86% 1174
chr15 697587 0.68% 927
chr16 787483 0.87% 1116
chr17 1065299 1.28% 1129
chr18 379278 0.47% 515
chr19 741119 1.26% 1029
chr20 619013 0.96% 816
chr21 420091 0.90% 592
chr22 267277 0.53% 418
chrX 20100320 12.88% 33151
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53837 190 45283 696.84 496
global segment-length histogram

Files

Filename Size md5
ENCFF889LTS.bed.gz 972.33 KB 515f373428cba5dfd638d0197d3e35b5
ENCFF889LTS.tabix.bed.gz 512.48 KB ec6ef4703bc5fe205978dc90218a6c18
ENCFF889LTS.tabix.bed.gz.tbi 119.12 KB 73fc7c6350aaf1ab9861d7213a261bbb
genomic_resource.yaml 1.82 KB 0fdcf6d1a68980a0e30a22167f374551
statistics/