Resource

Id Histone_ChIP-seq/ENCSR956VQBcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR956VQB [biosample_summary="Homo sapiens testis tissue male adult (37 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR956VQB
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000473/
  • biosample_summary: Homo sapiens testis tissue male adult (37 years)
  • date_created: 2017-12-06T21:11:12.755238+00:00
  • date_released: 2019-02-12
  • doi: 10.17989/ENCSR956VQB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR956VQB float

Histone_ChIP-seq_ENCSR956VQB
Histone_ChIP-seq ENCSR956VQB [biosample_summary="Homo sapiens testis tissue male adult (37 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR956VQB [1.62, 8.55]
n
69,612,214
mean
3.54
sd
0.928

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 696122142.16% 84315
chr1 7263823 2.92% 8491
chr2 5392633 2.23% 6697
chr3 4440606 2.24% 5456
chr4 2328273 1.22% 3067
chr5 3275699 1.80% 4086
chr6 3613886 2.12% 4675
chr7 3037867 1.91% 3922
chr8 2923969 2.01% 3648
chr9 3446002 2.49% 3996
chr10 3599266 2.69% 4276
chr11 3878742 2.87% 4507
chr12 3506732 2.63% 4191
chr13 1306523 1.14% 1749
chr14 2623663 2.45% 3093
chr15 2503965 2.46% 3025
chr16 2887590 3.20% 3360
chr17 4040560 4.85% 4511
chr18 1286237 1.60% 1710
chr19 3069209 5.24% 3537
chr20 2329262 3.61% 2722
chr21 717442 1.54% 940
chr22 1891880 3.72% 2179
chrX 247958 0.16% 476
chrY 427 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84315 230 13948 825.62 640
global segment-length histogram

Files

Filename Size md5
ENCFF600MJO.bed.gz 1.67 MB 26df6d470d696b42ff1701e5b7fd7b18
ENCFF600MJO.tabix.bed.gz 862.35 KB 5c9ad465e9369d8992abb678495cb6d1
ENCFF600MJO.tabix.bed.gz.tbi 280.61 KB d53beeb46e37e7377f082aa3f8de10ed
genomic_resource.yaml 1.7 KB c2643d64a60faa4d3281b6a0e94e80c1
statistics/