Resource

Id Histone_ChIP-seq/ENCSR956UFVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR956UFV [biosample_summary="Homo sapiens ovary tissue female adult (30 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR956UFV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female adult (30 years)
  • date_created: 2015-10-01T07:16:15.186428+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR956UFV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (30 years)
  • status: released
  • submitter_comment: Several of the old analyses and files on this dataset have been revoked due to processing with a contaminated control. The new analyses and files submitted in Feb 2023 are the corrected version.
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR956UFV float

Histone_ChIP-seq_ENCSR956UFV
Histone_ChIP-seq ENCSR956UFV [biosample_summary="Homo sapiens ovary tissue female adult (30 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR956UFV [1.8, 18.2]
n
7,566,831
mean
5.03
sd
2.09

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 75668310.24% 12138
chr1 409566 0.16% 778
chr2 351487 0.15% 692
chr3 338316 0.17% 597
chr4 349740 0.18% 637
chr5 520801 0.29% 811
chr6 248234 0.15% 487
chr7 404234 0.25% 687
chr8 239448 0.16% 452
chr9 244608 0.18% 420
chr10 267102 0.20% 496
chr11 204543 0.15% 391
chr12 378013 0.28% 586
chr13 127310 0.11% 266
chr14 139941 0.13% 281
chr15 214499 0.21% 318
chr16 242760 0.27% 382
chr17 158698 0.19% 287
chr18 110103 0.14% 216
chr19 2006449 3.42% 2163
chr20 127347 0.20% 234
chr21 82712 0.18% 151
chr22 73861 0.15% 133
chrX 326265 0.21% 671
chrY 794 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 12138 230 23383 623.4 472
global segment-length histogram

Files

Filename Size md5
ENCFF926UJJ.bed.gz 235.69 KB 6176e9e3cc8396ab42095ebc538dddcc
ENCFF926UJJ.tabix.bed.gz 121.88 KB 270d9c39abf09fb8f6cfa66b8cd68576
ENCFF926UJJ.tabix.bed.gz.tbi 81.22 KB 9cad7369acca949a1e370cad357cfd0a
genomic_resource.yaml 1.9 KB b1abb0346a5459761732a16994312776
statistics/