Resource

Id Histone_ChIP-seq/ENCSR956CFXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR956CFX [biosample_summary="Homo sapiens layer of hippocampus tissue male adult (81 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR956CFX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002305/
  • biosample_summary: Homo sapiens layer of hippocampus tissue male adult (81 years)
  • date_created: 2015-09-15T19:49:17.830035+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR956CFX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (81 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR956CFX float

Histone_ChIP-seq_ENCSR956CFX
Histone_ChIP-seq ENCSR956CFX [biosample_summary="Homo sapiens layer of hippocampus tissue male adult (81 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR956CFX [1.64, 45.6]
n
41,255,863
mean
14.7
sd
8.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 412558631.28% 35575
chr1 3987418 1.60% 3368
chr2 2864598 1.18% 2544
chr3 2445425 1.23% 2033
chr4 1715070 0.90% 1458
chr4_GL000008v2_random 965 0.46% 2
chr5 2088379 1.15% 1783
chr6 2488256 1.46% 2125
chr7 1916906 1.20% 1725
chr8 1580681 1.09% 1405
chr9 1734114 1.25% 1529
chr10 1823624 1.36% 1649
chr11 2234060 1.65% 1827
chr12 2169708 1.63% 1805
chr13 972586 0.85% 874
chr14 1347276 1.26% 1124
chr14_KI270722v1_random 451 0.23% 1
chr15 1315038 1.29% 1166
chr16 1521183 1.68% 1320
chr17 2214923 2.66% 1857
chr17_GL000205v2_random 1657 0.89% 1
chr17_KI270729v1_random 479 0.17% 1
chr18 783004 0.97% 724
chr19 2593816 4.42% 2254
chr20 1008481 1.56% 873
chr21 407739 0.87% 394
chr22 832307 1.64% 727
chr22_KI270736v1_random 3656 2.01% 6
chrUn_GL000216v2 755 0.43% 1
chrUn_GL000219v1 2682 1.50% 2
chrX 1159953 0.74% 969
chrY 40673 0.07% 28
3335 contigs with no values (127669170 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 35575 260 10267 1159.69 899
global segment-length histogram

Files

Filename Size md5
ENCFF754GGQ.bed.gz 795.02 KB eb3a5208cc1f82106a8634372b9e37a3
ENCFF754GGQ.tabix.bed.gz 381.97 KB 1b36b1890b6026299367a585578dafb2
ENCFF754GGQ.tabix.bed.gz.tbi 190.5 KB 8803f29f99f3bc41ebaf87b801309766
genomic_resource.yaml 2.01 KB 638474bad5e8e5bee17b29f2ecde5a5d
statistics/