Resource

Id Histone_ChIP-seq/ENCSR953ULKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR953ULK [biosample_summary="Homo sapiens fibroblast of breast female adult (26 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR953ULK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0003079/
  • biosample_summary: Homo sapiens fibroblast of breast female adult (26 years)
  • date_created: 2015-09-15T20:26:21.098273+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR953ULK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (26 years)
  • status: released
  • submitter_comment: When the ENCODE DCC initially imported Roadmap metadata, the target of this experiment was labeled as H3K36me3. We have since discovered inaccuracies in the GEO record, and confirmed that the data is, in fact, from an experiment with the target of H3K27ac. The Library and Antibody associated with this experiment were updated on January 31, 2019 to reflect the accurate metadata.
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR953ULK float

Histone_ChIP-seq_ENCSR953ULK
Histone_ChIP-seq ENCSR953ULK [biosample_summary="Homo sapiens fibroblast of breast female adult (26 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR953ULK [1.77, 38.1]
n
56,230,087
mean
8.67
sd
5.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 562300871.75% 59431
chr1 5581955 2.24% 5865
chr2 4336623 1.79% 4737
chr3 3438443 1.73% 3657
chr4 2099198 1.10% 2391
chr5 2930099 1.61% 3027
chr6 3258117 1.91% 3542
chr7 2711522 1.70% 2916
chr8 2327458 1.60% 2613
chr9 2462881 1.78% 2632
chr10 2778449 2.08% 2931
chr11 3179832 2.35% 3188
chr12 3027332 2.27% 3098
chr13 1167744 1.02% 1328
chr14 1768393 1.65% 1875
chr15 2145903 2.10% 2318
chr16 1975105 2.19% 2086
chr17 3048525 3.66% 2957
chr18 1023748 1.27% 1148
chr19 2838007 4.84% 2601
chr20 1405014 2.18% 1497
chr21 620191 1.33% 677
chr22 1253108 2.47% 1274
chrX 852440 0.55% 1073
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 59431 170 24192 946.14 663
global segment-length histogram

Files

Filename Size md5
ENCFF852KAS.bed.gz 1.34 MB b143e0d42fe11f4b4da42023c2005fbb
ENCFF852KAS.tabix.bed.gz 630.82 KB 2acb55b18c625c73707ca207bd255ca5
ENCFF852KAS.tabix.bed.gz.tbi 230.96 KB 75c599a4a72a988ab59c6aefc8bc1919
genomic_resource.yaml 1.92 KB 7ad248c3b5030a7cef49a9c38f8f82da
statistics/