Resource
| Id | Histone_ChIP-seq/ENCSR948YYZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR948YYZ [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN658FEG|/analyses/ENCAN658FEG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF258BZL|/files/ENCFF258BZL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF258BZL|/files/ENCFF258BZL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.58. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR948YYZ | float |
Histone_ChIP-seq_ENCSR948YYZ |
Histone_ChIP-seq ENCSR948YYZ [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)" and target="H3K27ac"]
|
 |
[1.57, 66.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 166652418 | 5.18% | 82469 |
| chr1 | 17321573 | 6.96% | 8015 |
| chr1_KI270711v1_random | 363 | 0.86% | 1 |
| chr1_KI270713v1_random | 982 | 2.41% | 2 |
| chr2 | 13054078 | 5.39% | 6691 |
| chr3 | 11492050 | 5.80% | 5619 |
| chr4 | 6414960 | 3.37% | 3358 |
| chr5 | 8406767 | 4.63% | 4166 |
| chr6 | 10101723 | 5.91% | 5010 |
| chr7 | 7669323 | 4.81% | 4023 |
| chr8 | 6514757 | 4.49% | 3361 |
| chr9 | 6703335 | 4.84% | 3551 |
| chr10 | 9155657 | 6.84% | 4344 |
| chr11 | 7820881 | 5.79% | 3862 |
| chr11_KI270721v1_random | 711 | 0.71% | 2 |
| chr12 | 7865713 | 5.90% | 3899 |
| chr13 | 3688385 | 3.23% | 2047 |
| chr14 | 5417444 | 5.06% | 2730 |
| chr15 | 5732993 | 5.62% | 2818 |
| chr16 | 6236280 | 6.90% | 3036 |
| chr17 | 9117185 | 10.95% | 4095 |
| chr17_GL000205v2_random | 344 | 0.19% | 1 |
| chr18 | 2992810 | 3.72% | 1601 |
| chr19 | 6461272 | 11.02% | 2905 |
| chr20 | 4473883 | 6.94% | 2189 |
| chr21 | 1775676 | 3.80% | 982 |
| chr22 | 4238440 | 8.34% | 1937 |
| chr22_KI270733v1_random | 246 | 0.14% | 1 |
| chr22_KI270734v1_random | 594 | 0.36% | 2 |
| chrUn_GL000195v1 | 2823 | 1.54% | 6 |
| chrUn_GL000218v1 | 314 | 0.19% | 1 |
| chrUn_GL000219v1 | 3399 | 1.90% | 4 |
| chrUn_GL000220v1 | 249 | 0.15% | 1 |
| chrX | 3861059 | 2.47% | 2126 |
| chrY | 126149 | 0.22% | 83 |
| 3332 contigs with no values (127678358 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 82469 | 210 | 193778 | 2020.79 | 1074 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF369MQM.bed.gz | 2.1 MB | dd91ddf224cbf71e191f1fedcea24e8d |
| ENCFF369MQM.tabix.bed.gz | 918.46 KB | c95572c73c4aecdc11fb6a18111de05d |
| ENCFF369MQM.tabix.bed.gz.tbi | 222.17 KB | fb92b9321564313b05b325254da4b7c0 |
| genomic_resource.yaml | 2.78 KB | 435e47ddf88493241b8288fa2dbffcb0 |
| statistics/ |