Resource

Id Histone_ChIP-seq/ENCSR946QFDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR946QFD [biosample_summary="Homo sapiens PC-3" and target="H2AFZ"]
Description
Labels
  • accession: ENCSR946QFD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002074/
  • biosample_summary: Homo sapiens PC-3
  • date_created: 2014-02-20T05:41:32.768935+00:00
  • date_released: 2016-11-09
  • doi: 10.17989/ENCSR946QFD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H2AFZ

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR946QFD float

Histone_ChIP-seq_ENCSR946QFD
Histone_ChIP-seq ENCSR946QFD [biosample_summary="Homo sapiens PC-3" and target="H2AFZ"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR946QFD [1.39, 22.1]
n
51,185,065
mean
5.93
sd
3.08

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 511850651.59% 71423
chr1 4991471 2.00% 6753
chr2 4311221 1.78% 6207
chr3 3453354 1.74% 4950
chr4 2687662 1.41% 3855
chr5 2990060 1.65% 4334
chr6 3196693 1.87% 4322
chr7 2427259 1.52% 3404
chr8 2690678 1.85% 3914
chr9 1605078 1.16% 2213
chr10 2453284 1.83% 3448
chr11 2541129 1.88% 3465
chr12 2669655 2.00% 3700
chr13 1170036 1.02% 1651
chr14 1830861 1.71% 2499
chr15 1474813 1.45% 1953
chr16 1191244 1.32% 1654
chr17 2247375 2.70% 2998
chr18 1024104 1.27% 1525
chr19 1920317 3.28% 2492
chr20 1441607 2.24% 2059
chr21 714989 1.53% 1122
chr22 644486 1.27% 906
chrX 1507415 0.97% 1998
chrY 274 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 71423 195 5548 716.65 568
global segment-length histogram

Files

Filename Size md5
ENCFF687ZLF.bed.gz 1.79 MB 8818b8d32da5a8d4b6f44c6eddb5f20e
ENCFF687ZLF.tabix.bed.gz 782.19 KB 32f631ef6387310045d7f57d403b4dbe
ENCFF687ZLF.tabix.bed.gz.tbi 325.66 KB 2ed763f4036f79f2649cf82ba1d9f638
genomic_resource.yaml 1.35 KB 84335c1b0501833f118f90ccaf525500
statistics/