Resource

Id Histone_ChIP-seq/ENCSR945KBKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR945KBK [biosample_summary="Homo sapiens PC-9" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR945KBK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002847/
  • biosample_summary: Homo sapiens PC-9
  • date_created: 2014-10-24T16:26:23.216949+00:00
  • date_released: 2017-01-12
  • doi: 10.17989/ENCSR945KBK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR945KBK float

Histone_ChIP-seq_ENCSR945KBK
Histone_ChIP-seq ENCSR945KBK [biosample_summary="Homo sapiens PC-9" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR945KBK [1.36, 88]
n
52,826,909
mean
15.1
sd
11.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 528269091.64% 39666
chr1 5498547 2.21% 4116
chr2 4031351 1.66% 3016
chr3 3208051 1.62% 2343
chr4 1872378 0.98% 1439
chr5 2652588 1.46% 1936
chr6 3244624 1.90% 2342
chr7 2573112 1.61% 1957
chr8 2264904 1.56% 1711
chr9 2094536 1.51% 1642
chr10 2334227 1.74% 1824
chr11 2808436 2.08% 2032
chr12 2770104 2.08% 1946
chr13 1091875 0.95% 822
chr14 1711434 1.60% 1243
chr15 1674596 1.64% 1261
chr16 1881599 2.08% 1496
chr17 2724448 3.27% 2033
chr18 1008307 1.25% 777
chr19 2537198 4.33% 2008
chr20 1736377 2.69% 1299
chr21 577832 1.24% 438
chr22 1180657 2.32% 918
chrM 8898 53.70% 5
chrX 1340040 0.86% 1061
chrY 790 <0.01% 1
3341 contigs with no values (129060516 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39666 235 22956 1331.79 935
global segment-length histogram

Files

Filename Size md5
ENCFF225MWY.bed.gz 1.07 MB bebaa8209e6b446bee134941547d8da7
ENCFF225MWY.tabix.bed.gz 456.92 KB e264b4e01eb36f1d0438e3f7bf0573e4
ENCFF225MWY.tabix.bed.gz.tbi 182.05 KB 751cd8f1e306833bc455595ffdf937ac
genomic_resource.yaml 1.36 KB 2e4a5b49e939571b4e74d8d90013aa16
statistics/