Resource

Id Histone_ChIP-seq/ENCSR944QSHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR944QSH [biosample_summary="Homo sapiens small intestine tissue female adult (30 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR944QSH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002108/
  • biosample_summary: Homo sapiens small intestine tissue female adult (30 years)
  • date_created: 2015-10-01T07:16:09.066235+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR944QSH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (30 years)
  • status: released
  • submitter_comment: An error has been identified on one more protocol documents in this experiment regarding the antibody specifications. Please refer to the external references for the correct information.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR944QSH float

Histone_ChIP-seq_ENCSR944QSH
Histone_ChIP-seq ENCSR944QSH [biosample_summary="Homo sapiens small intestine tissue female adult (30 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR944QSH [1.27, 77.4]
n
34,325,732
mean
25.5
sd
14.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 343257321.07% 26959
chr1 3468767 1.39% 2685
chr2 2372704 0.98% 1854
chr3 1898491 0.96% 1469
chr4 1371126 0.72% 1084
chr5 1575891 0.87% 1174
chr6 1976134 1.16% 1552
chr7 1656406 1.04% 1358
chr8 1232615 0.85% 959
chr9 1435516 1.04% 1100
chr10 1445456 1.08% 1136
chr11 1897041 1.40% 1390
chr12 1744478 1.31% 1325
chr13 705387 0.62% 552
chr14 1157924 1.08% 884
chr15 1129457 1.11% 873
chr16 1396826 1.55% 1097
chr17 2094930 2.52% 1641
chr18 578896 0.72% 445
chr19 2172324 3.71% 1897
chr20 890449 1.38% 681
chr21 364333 0.78% 278
chr22 819486 1.61% 661
chrX 940420 0.60% 863
chrY 675 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 26959 195 11994 1273.26 1025
global segment-length histogram

Files

Filename Size md5
ENCFF011QCH.bed.gz 720.95 KB a6b40832afca0955c99a637d9e8c6088
ENCFF011QCH.tabix.bed.gz 308.72 KB dbe7923a7bd972de0eb7dbf0007c94e7
ENCFF011QCH.tabix.bed.gz.tbi 148.37 KB e3d87ef964adbd0f78a42f646bf4f31a
genomic_resource.yaml 1.71 KB 4169b9c8d9ac0bee90fe3249983edc37
statistics/