Resource

Id Histone_ChIP-seq/ENCSR941YPYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR941YPY [biosample_summary="Homo sapiens iPS-11a" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR941YPY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007099/
  • biosample_summary: Homo sapiens iPS-11a
  • date_created: 2015-09-15T19:51:29.024333+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR941YPY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR941YPY float

Histone_ChIP-seq_ENCSR941YPY
Histone_ChIP-seq ENCSR941YPY [biosample_summary="Homo sapiens iPS-11a" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR941YPY [2.06, 79.4]
n
28,927,515
mean
24.1
sd
13.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 289275150.90% 30083
chr1 2817152 1.13% 2911
chr1_KI270713v1_random 425 1.04% 1
chr2 1944104 0.80% 1963
chr3 1616096 0.81% 1531
chr4 1196912 0.63% 1138
chr5 1431067 0.79% 1379
chr6 1865083 1.09% 1767
chr7 1344148 0.84% 1419
chr8 1109153 0.76% 1110
chr9 1137234 0.82% 1196
chr10 1182978 0.88% 1218
chr11 1553583 1.15% 1599
chr12 1548194 1.16% 1515
chr13 639018 0.56% 615
chr14 1012529 0.95% 967
chr15 917278 0.90% 948
chr16 1108853 1.23% 1215
chr17 1581396 1.90% 1806
chr17_GL000205v2_random 3284 1.77% 3
chr18 507972 0.63% 524
chr19 1860394 3.17% 2325
chr20 792611 1.23% 865
chr21 249061 0.53% 247
chr22 547790 1.08% 651
chr22_KI270736v1_random 223 0.12% 1
chrUn_GL000219v1 1223 0.68% 3
chrUn_GL000220v1 281 0.17% 1
chrX 918694 0.59% 1139
chrY 40779 0.07% 26
3337 contigs with no values (128327829 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30083 160 7585 961.59 755
global segment-length histogram

Files

Filename Size md5
ENCFF217CMJ.bed.gz 641.05 KB e7bb866b93aa74386c20bd6714bb98b0
ENCFF217CMJ.tabix.bed.gz 311.29 KB c7e8baf1fa730c2d4fedc707433b57e7
ENCFF217CMJ.tabix.bed.gz.tbi 146.96 KB 0b9278d66061468e2be7b7ccbbbc0bba
genomic_resource.yaml 1.87 KB 7773b71dfc46a2e8a97288c2c8afdce1
statistics/