Resource

Id Histone_ChIP-seq/ENCSR939VQFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR939VQF [biosample_summary="Homo sapiens BLaER1 6 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR939VQF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 6 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:37.742989+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR939VQF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 6 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR939VQF float

Histone_ChIP-seq_ENCSR939VQF
Histone_ChIP-seq ENCSR939VQF [biosample_summary="Homo sapiens BLaER1 6 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR939VQF [1.26, 29.7]
n
178,806,800
mean
5.94
sd
3.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1788068005.56% 255827
chr1 12347769 4.96% 17844
chr1_KI270706v1_random 19201 10.97% 27
chr1_KI270707v1_random 3460 10.80% 6
chr1_KI270708v1_random 33637 26.34% 47
chr1_KI270709v1_random 20848 31.18% 24
chr1_KI270710v1_random 2070 5.15% 5
chr1_KI270711v1_random 250 0.59% 1
chr1_KI270712v1_random 4196 2.38% 2
chr1_KI270713v1_random 2021 4.96% 3
chr1_KI270714v1_random 1545 3.70% 1
chr2 13799107 5.70% 20265
chr2_KI270716v1_random 8363 5.44% 3
chr3 10868720 5.48% 16546
chr3_GL000221v1_random 6706 4.32% 17
chr4 9973574 5.24% 14850
chr4_GL000008v2_random 14396 6.86% 17
chr5 10854259 5.98% 15955
chr5_GL000208v1_random 4208 4.54% 9
chr6 9081168 5.32% 14013
chr7 10927504 6.86% 15263
chr8 10911038 7.52% 15176
chr9 6662527 4.81% 9997
chr9_KI270719v1_random 7374 4.17% 11
chr9_KI270720v1_random 1256 3.22% 3
chr10 8768592 6.55% 12583
chr11 6714850 4.97% 9895
chr12 8049882 6.04% 11182
chr13 5571231 4.87% 8738
chr14 5304736 4.96% 7665
chr14_GL000009v2_random 16161 8.01% 30
chr14_GL000194v1_random 18086 9.45% 23
chr14_GL000225v1_random 143337 67.88% 103
chr14_KI270722v1_random 28464 14.67% 45
chr14_KI270723v1_random 6089 15.98% 8
chr14_KI270724v1_random 6908 17.46% 7
chr14_KI270725v1_random 7916 4.58% 15
chr14_KI270726v1_random 1367 3.13% 4
chr15 4805533 4.71% 7148
chr15_KI270727v1_random 1799 0.40% 6
chr16 4820710 5.34% 6485
chr16_KI270728v1_random 44120 2.36% 74
chr17 4263627 5.12% 5796
chr17_GL000205v2_random 10406 5.61% 15
chr17_KI270729v1_random 208933 74.40% 25
chr17_KI270730v1_random 34989 31.09% 22
chr18 4164487 5.18% 6315
chr19 9224757 15.74% 8465
chr20 3780939 5.87% 5360
chr21 2995752 6.41% 4022
chr22 2138172 4.21% 2893
chr22_KI270731v1_random 1155 0.77% 3
chr22_KI270732v1_random 4031 9.70% 3
chr22_KI270733v1_random 21491 11.95% 37
chr22_KI270734v1_random 250 0.15% 1
chr22_KI270735v1_random 6193 14.47% 5
chr22_KI270736v1_random 140096 77.01% 39
chr22_KI270737v1_random 67332 64.84% 42
chr22_KI270738v1_random 57688 58.05% 19
chr22_KI270739v1_random 578 0.78% 2
chrUn_GL000195v1 262 0.14% 1
chrUn_GL000213v1 6627 4.03% 11
chrUn_GL000214v1 16160 11.73% 30
chrUn_GL000216v2 127751 72.34% 54
chrUn_GL000218v1 8613 5.34% 13
chrUn_GL000219v1 14075 7.85% 18
chrUn_GL000220v1 7817 4.83% 13
chrUn_GL000224v1 97099 54.04% 91
chrUn_KI270322v1 887 4.13% 3
chrUn_KI270330v1 748 45.28% 2
chrUn_KI270372v1 268 16.24% 1
chrUn_KI270420v1 306 13.18% 1
chrUn_KI270435v1 12051 12.96% 27
chrUn_KI270438v1 67771 60.24% 22
chrUn_KI270442v1 133237 33.98% 67
chrUn_KI270448v1 256 3.20% 1
chrUn_KI270465v1 437 24.63% 1
chrUn_KI270508v1 1098 56.28% 1
chrUn_KI270509v1 388 16.74% 1
chrUn_KI270510v1 375 15.53% 1
chrUn_KI270512v1 7712 33.99% 10
chrUn_KI270516v1 363 27.92% 1
chrUn_KI270517v1 328 10.08% 1
chrUn_KI270518v1 509 23.28% 1
chrUn_KI270519v1 30949 22.41% 48
chrUn_KI270521v1 687 8.99% 2
chrUn_KI270538v1 1832 2.01% 4
chrUn_KI270539v1 313 31.52% 1
chrUn_KI270580v1 1358 87.44% 2
chrUn_KI270581v1 250 3.55% 1
chrUn_KI270582v1 252 3.87% 1
chrUn_KI270583v1 253 18.07% 1
chrUn_KI270584v1 1012 22.42% 3
chrUn_KI270589v1 3574 8.04% 2
chrUn_KI270590v1 611 13.04% 2
chrUn_KI270591v1 998 17.22% 1
chrUn_KI270741v1 3414 2.17% 8
chrUn_KI270742v1 4081 2.19% 8
chrUn_KI270743v1 11866 5.63% 24
chrUn_KI270744v1 25795 15.31% 34
chrUn_KI270745v1 580 1.38% 2
chrUn_KI270746v1 567 0.85% 2
chrUn_KI270747v1 4908 2.47% 10
chrUn_KI270748v1 1183 1.27% 2
chrUn_KI270749v1 5169 3.26% 7
chrUn_KI270750v1 3191 2.14% 7
chrUn_KI270751v1 12397 8.22% 22
chrUn_KI270753v1 9089 14.44% 15
chrUn_KI270754v1 21046 52.36% 18
chrUn_KI270755v1 1809 4.93% 4
chrUn_KI270756v1 77671 97.59% 12
chrUn_KI270757v1 7544 10.59% 12
chrX 10782338 6.91% 17600
chrY 301071 0.53% 440
3253 contigs with no values (118274768 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 255827 250 89834 698.94 443
global segment-length histogram

Files

Filename Size md5
ENCFF492QLN.bed.gz 4.94 MB 423d2782186b1384aa8fbe162ea8638a
ENCFF492QLN.tabix.bed.gz 2.43 MB 5493a28c7a852e7ea69088943138c7e5
ENCFF492QLN.tabix.bed.gz.tbi 566.01 KB 4114d7d71d2130ad6eafa2948a9e6fe5
genomic_resource.yaml 3.11 KB 1fb6988f091510c4d0b5eaf828b32058
statistics/