Resource
| Id | Histone_ChIP-seq/ENCSR939JZW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR939JZW [biosample_summary="Homo sapiens natural killer cell male adult (21 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN894NJS|/analyses/ENCAN894NJS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN894NJS|/analyses/ENCAN894NJS/} has in progress subobject document {a6f3732f-e7be-4499-a0c7-f5cd3fbb0e9a|/documents/a6f3732f-e7be-4499-a0c7-f5cd3fbb0e9a/} audit_not_compliant: Processed alignments file {ENCFF204VRK|/files/ENCFF204VRK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 27619196 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR939JZW | float |
Histone_ChIP-seq_ENCSR939JZW |
Histone_ChIP-seq ENCSR939JZW [biosample_summary="Homo sapiens natural killer cell male adult (21 years)" and target="H3K27me3"]
|
 |
[1.79, 17.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 20586205 | 0.64% | 46778 |
| chr1 | 1987214 | 0.80% | 4612 |
| chr2 | 1652949 | 0.68% | 3720 |
| chr3 | 915056 | 0.46% | 2221 |
| chr4 | 882322 | 0.46% | 2069 |
| chr5 | 1329475 | 0.73% | 2994 |
| chr6 | 1745473 | 1.02% | 3750 |
| chr7 | 1094642 | 0.69% | 2446 |
| chr8 | 894815 | 0.62% | 2041 |
| chr9 | 917744 | 0.66% | 2116 |
| chr10 | 1007368 | 0.75% | 2353 |
| chr11 | 1033791 | 0.77% | 2416 |
| chr12 | 1035257 | 0.78% | 2335 |
| chr13 | 516184 | 0.45% | 1193 |
| chr14 | 712545 | 0.67% | 1701 |
| chr15 | 824820 | 0.81% | 1889 |
| chr16 | 486317 | 0.54% | 1074 |
| chr17 | 1024864 | 1.23% | 2084 |
| chr18 | 348620 | 0.43% | 895 |
| chr19 | 900840 | 1.54% | 1843 |
| chr20 | 605014 | 0.94% | 1404 |
| chr21 | 194047 | 0.42% | 436 |
| chr22 | 339778 | 0.67% | 785 |
| chrX | 133824 | 0.09% | 392 |
| chrY | 3246 | 0.01% | 9 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 46778 | 160 | 11304 | 440.08 | 317 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF138FVQ.bed.gz | 862.14 KB | 736ba0ec8bc4671fdaffc2680801ff1d |
| ENCFF138FVQ.tabix.bed.gz | 442.53 KB | 38d1c0a27f2f98fbb23b4c0af2e7c705 |
| ENCFF138FVQ.tabix.bed.gz.tbi | 157.84 KB | 83ae4be73659e505120e3ca06f76a935 |
| genomic_resource.yaml | 2.21 KB | d69537d4ce0a0b0e4d597fbaaf96b1f2 |
| statistics/ |