Resource
| Id | Histone_ChIP-seq/ENCSR933MQW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR933MQW [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN002HNQ|/analyses/ENCAN002HNQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF591YNK|/files/ENCFF591YNK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF591YNK|/files/ENCFF591YNK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.54. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR933MQW | float |
Histone_ChIP-seq_ENCSR933MQW |
Histone_ChIP-seq ENCSR933MQW [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)" and target="H3K36me3"]
|
 |
[1.62, 14.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 171599644 | 5.33% | 86263 |
| chr1 | 16870529 | 6.78% | 8022 |
| chr2 | 13578549 | 5.61% | 7002 |
| chr3 | 10970210 | 5.53% | 5726 |
| chr4 | 7058113 | 3.71% | 3964 |
| chr5 | 8648169 | 4.76% | 4272 |
| chr6 | 8183441 | 4.79% | 4306 |
| chr7 | 8018450 | 5.03% | 4345 |
| chr8 | 5916119 | 4.08% | 3156 |
| chr9 | 7357858 | 5.32% | 3667 |
| chr10 | 7721660 | 5.77% | 4129 |
| chr11 | 8733364 | 6.47% | 4085 |
| chr12 | 9581365 | 7.19% | 4471 |
| chr13 | 3717591 | 3.25% | 2150 |
| chr14 | 6229650 | 5.82% | 2970 |
| chr15 | 6651056 | 6.52% | 3229 |
| chr16 | 7575107 | 8.39% | 3470 |
| chr17 | 9893442 | 11.88% | 4404 |
| chr18 | 2836137 | 3.53% | 1638 |
| chr19 | 7991424 | 13.63% | 3918 |
| chr20 | 5107593 | 7.93% | 2329 |
| chr21 | 2018353 | 4.32% | 992 |
| chr22 | 4205024 | 8.27% | 1892 |
| chrX | 2572495 | 1.65% | 1980 |
| chrY | 163945 | 0.29% | 146 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 86263 | 230 | 68963 | 1989.26 | 1046 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF616HZY.bed.gz | 1.9 MB | 29c642292701cf28dcee50c1b1b586c4 |
| ENCFF616HZY.tabix.bed.gz | 903.37 KB | d115140f298f185dc4ce2417533c5b50 |
| ENCFF616HZY.tabix.bed.gz.tbi | 142.41 KB | d0e1dd0c70eba9fea50af7b2c969e140 |
| genomic_resource.yaml | 2.81 KB | 939258b1f3a2fd250eff4fdb197fb643 |
| statistics/ |