Resource
| Id | Histone_ChIP-seq/ENCSR930JRJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR930JRJ [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN530IUK|/analyses/ENCAN530IUK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF155PSS|/files/ENCFF155PSS/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 40009756 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR930JRJ | float |
Histone_ChIP-seq_ENCSR930JRJ |
Histone_ChIP-seq ENCSR930JRJ [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)" and target="H3K27me3"]
|
 |
[1.76, 14.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 42491912 | 1.32% | 40742 |
| chr1 | 4287488 | 1.72% | 4327 |
| chr2 | 2798625 | 1.16% | 2561 |
| chr3 | 1371517 | 0.69% | 1343 |
| chr4 | 1468718 | 0.77% | 1215 |
| chr5 | 2211031 | 1.22% | 1910 |
| chr6 | 2348429 | 1.37% | 1949 |
| chr7 | 2066452 | 1.30% | 1749 |
| chr8 | 1770207 | 1.22% | 1712 |
| chr9 | 1863678 | 1.35% | 1729 |
| chr10 | 2304273 | 1.72% | 2175 |
| chr11 | 2118493 | 1.57% | 2118 |
| chr12 | 2178137 | 1.63% | 2161 |
| chr13 | 961220 | 0.84% | 861 |
| chr14 | 1335456 | 1.25% | 1326 |
| chr15 | 1292018 | 1.27% | 1284 |
| chr16 | 1548434 | 1.71% | 1591 |
| chr17 | 2808195 | 3.37% | 2654 |
| chr18 | 633123 | 0.79% | 642 |
| chr19 | 2651295 | 4.52% | 2671 |
| chr20 | 2335880 | 3.62% | 2381 |
| chr21 | 439813 | 0.94% | 438 |
| chr22 | 1476589 | 2.91% | 1714 |
| chrX | 220294 | 0.14% | 227 |
| chrY | 2547 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 40742 | 230 | 31283 | 1042.95 | 666 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF591PDC.bed.gz | 736.68 KB | 7e0db44fc38de93a390e2d42d052cc66 |
| ENCFF591PDC.tabix.bed.gz | 386.72 KB | 7c8030119534abec76a6d0a87290a46b |
| ENCFF591PDC.tabix.bed.gz.tbi | 130.58 KB | c56d31c466efa0ba3770aabc6df39718 |
| genomic_resource.yaml | 2.03 KB | 849b99dcc8f036b3ee08950b3b10732a |
| statistics/ |