Resource

Id Histone_ChIP-seq/ENCSR930HLXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR930HLX [biosample_summary="Homo sapiens thoracic aorta tissue male adult (54 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR930HLX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001515/
  • biosample_summary: Homo sapiens thoracic aorta tissue male adult (54 years)
  • date_created: 2016-03-19T00:38:32.490571+00:00
  • date_released: 2016-10-24
  • doi: 10.17989/ENCSR930HLX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR930HLX float

Histone_ChIP-seq_ENCSR930HLX
Histone_ChIP-seq ENCSR930HLX [biosample_summary="Homo sapiens thoracic aorta tissue male adult (54 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR930HLX [1.47, 38.9]
n
68,860,152
mean
14.4
sd
9.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 688601522.14% 52897
chr1 6597238 2.65% 4863
chr2 4960342 2.05% 3973
chr3 4215562 2.13% 3340
chr4 3170667 1.67% 2568
chr5 3460502 1.91% 2783
chr6 4127321 2.42% 3183
chr7 3313920 2.08% 2543
chr8 2698728 1.86% 2212
chr9 2942190 2.13% 2312
chr10 3300843 2.47% 2726
chr11 3558364 2.63% 2538
chr12 3706734 2.78% 2791
chr13 1613356 1.41% 1350
chr14 2090371 1.95% 1577
chr15 2225476 2.18% 1717
chr16 2480038 2.75% 1871
chr17 3521105 4.23% 2464
chr18 1293494 1.61% 1075
chr19 3730615 6.36% 2679
chr20 1694616 2.63% 1302
chr21 768467 1.65% 654
chr22 1410696 2.78% 1005
chrX 1913643 1.23% 1331
chrY 65864 0.12% 40
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52897 235 30202 1301.78 847
global segment-length histogram

Files

Filename Size md5
ENCFF554OEO.bed.gz 1.39 MB 7b5e0c49f8c98fe274c9832a662834fe
ENCFF554OEO.tabix.bed.gz 604.18 KB ce440e927ce5769b720ddb396f92b2df
ENCFF554OEO.tabix.bed.gz.tbi 256.44 KB f3e5744d359ccf375c804ec2be60683c
genomic_resource.yaml 2.14 KB 0e60844bfb3b344ff0a1a426ac6e0044
statistics/