Resource
| Id | Histone_ChIP-seq/ENCSR925LJZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR925LJZ [biosample_summary="Homo sapiens H1" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN690VIX|/analyses/ENCAN690VIX/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF619JFN|/files/ENCFF619JFN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8943943 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF044YAN|/files/ENCFF044YAN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10353061 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR925LJZ | float |
Histone_ChIP-seq_ENCSR925LJZ |
Histone_ChIP-seq ENCSR925LJZ [biosample_summary="Homo sapiens H1" and target="H3K36me3"]
|
 |
[2.06, 13.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 14546044 | 0.45% | 49158 |
| chr1 | 1712263 | 0.69% | 5579 |
| chr2 | 908514 | 0.38% | 3235 |
| chr3 | 779973 | 0.39% | 2687 |
| chr4 | 416824 | 0.22% | 1513 |
| chr5 | 712157 | 0.39% | 2395 |
| chr6 | 618851 | 0.36% | 2126 |
| chr7 | 636044 | 0.40% | 2208 |
| chr8 | 423543 | 0.29% | 1497 |
| chr9 | 607153 | 0.44% | 2091 |
| chr10 | 544748 | 0.41% | 1904 |
| chr11 | 834266 | 0.62% | 2775 |
| chr12 | 929059 | 0.70% | 3051 |
| chr13 | 176498 | 0.15% | 688 |
| chr14 | 450200 | 0.42% | 1577 |
| chr15 | 497890 | 0.49% | 1723 |
| chr16 | 756135 | 0.84% | 2503 |
| chr17 | 1018612 | 1.22% | 3306 |
| chr18 | 145525 | 0.18% | 585 |
| chr19 | 1048825 | 1.79% | 3318 |
| chr20 | 538926 | 0.84% | 1716 |
| chr21 | 159270 | 0.34% | 578 |
| chr22 | 473707 | 0.93% | 1495 |
| chrX | 151961 | 0.10% | 587 |
| chrY | 5100 | 0.01% | 21 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 49158 | 140 | 4547 | 295.9 | 231 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF736WAN.bed.gz | 808.72 KB | be26760d8cf695b908741bf17772d5e7 |
| ENCFF736WAN.tabix.bed.gz | 442.51 KB | dad03796aab852963f11447f97a1b6ce |
| ENCFF736WAN.tabix.bed.gz.tbi | 110.36 KB | 8a798d23ccb5ebf74f165a7792b5fe49 |
| genomic_resource.yaml | 2.36 KB | e1fcf0ccd79825297ca005c070eb1b23 |
| statistics/ |