Resource
| Id | Histone_ChIP-seq/ENCSR920YBY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR920YBY [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN741RPX|/analyses/ENCAN741RPX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN741RPX|/analyses/ENCAN741RPX/} has in progress subobject document {91add1c2-64fb-4d16-929c-0a16a25dac88|/documents/91add1c2-64fb-4d16-929c-0a16a25dac88/} audit_not_compliant: Processed alignments file {ENCFF641LRJ|/files/ENCFF641LRJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 9254208 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF325EXU|/files/ENCFF325EXU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 21627399 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR920YBY | float |
Histone_ChIP-seq_ENCSR920YBY |
Histone_ChIP-seq ENCSR920YBY [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive" and target="H3K36me3"]
|
 |
[1.79, 20.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 140931651 | 4.38% | 173328 |
| chr1 | 13721397 | 5.51% | 16660 |
| chr2 | 10736377 | 4.43% | 13824 |
| chr3 | 9074388 | 4.58% | 11566 |
| chr4 | 5194693 | 2.73% | 7135 |
| chr5 | 7285548 | 4.01% | 9211 |
| chr6 | 6201927 | 3.63% | 8326 |
| chr7 | 6990537 | 4.39% | 8877 |
| chr8 | 5035116 | 3.47% | 6811 |
| chr9 | 6074468 | 4.39% | 7099 |
| chr10 | 6102300 | 4.56% | 7665 |
| chr11 | 6983385 | 5.17% | 7998 |
| chr12 | 8010283 | 6.01% | 9687 |
| chr13 | 3003797 | 2.63% | 4094 |
| chr14 | 4386414 | 4.10% | 5583 |
| chr15 | 5280052 | 5.18% | 6708 |
| chr16 | 6446648 | 7.14% | 7004 |
| chr17 | 7885965 | 9.47% | 9110 |
| chr18 | 2500493 | 3.11% | 3462 |
| chr19 | 7806879 | 13.32% | 8279 |
| chr20 | 4463515 | 6.93% | 5069 |
| chr21 | 1953495 | 4.18% | 2181 |
| chr22 | 3861543 | 7.60% | 3968 |
| chrX | 1932431 | 1.24% | 3011 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 173328 | 150 | 17364 | 813.09 | 568 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF996OPQ.bed.gz | 3.54 MB | 6cf971968654345d340062a83315346f |
| ENCFF996OPQ.tabix.bed.gz | 1.68 MB | 72f89784866a524903f8d407825ccb83 |
| ENCFF996OPQ.tabix.bed.gz.tbi | 170.4 KB | f0fcd2b1a21f1d0ef0fd261e6ec15e88 |
| genomic_resource.yaml | 2.79 KB | d04c9f3fb55c00ccc1f4fda902c93979 |
| statistics/ |