Resource
| Id | Histone_ChIP-seq/ENCSR920EOT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR920EOT [biosample_summary="Homo sapiens T-cell male adult (37 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN775GFH|/analyses/ENCAN775GFH/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN775GFH|/analyses/ENCAN775GFH/} has in progress subobject document {0ff93578-c6cb-4d39-81c4-93e24e7dd3d3|/documents/0ff93578-c6cb-4d39-81c4-93e24e7dd3d3/} audit_not_compliant: Processed alignments file {ENCFF192QMJ|/files/ENCFF192QMJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 25580386 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR920EOT | float |
Histone_ChIP-seq_ENCSR920EOT |
Histone_ChIP-seq ENCSR920EOT [biosample_summary="Homo sapiens T-cell male adult (37 years)" and target="H3K27me3"]
|
 |
[1.82, 41.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 110670242 | 3.44% | 199571 |
| chr1 | 11566565 | 4.65% | 20816 |
| chr2 | 8223091 | 3.40% | 15468 |
| chr3 | 4919652 | 2.48% | 9637 |
| chr4 | 3459573 | 1.82% | 6529 |
| chr5 | 5392208 | 2.97% | 9928 |
| chr6 | 5409760 | 3.17% | 10402 |
| chr7 | 5327092 | 3.34% | 9746 |
| chr8 | 4290134 | 2.96% | 8191 |
| chr9 | 4982679 | 3.60% | 8511 |
| chr10 | 6183329 | 4.62% | 11866 |
| chr11 | 6557015 | 4.85% | 11552 |
| chr12 | 4774839 | 3.58% | 8729 |
| chr13 | 2263319 | 1.98% | 4497 |
| chr14 | 3678427 | 3.44% | 6564 |
| chr15 | 4111858 | 4.03% | 7787 |
| chr16 | 4085307 | 4.52% | 7116 |
| chr17 | 6647292 | 7.98% | 10295 |
| chr18 | 2179831 | 2.71% | 4608 |
| chr19 | 6097403 | 10.40% | 9070 |
| chr20 | 4737517 | 7.35% | 8136 |
| chr21 | 1344778 | 2.88% | 2334 |
| chr22 | 3469255 | 6.83% | 5759 |
| chrX | 945003 | 0.61% | 1966 |
| chrY | 24315 | 0.04% | 64 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 199571 | 170 | 12968 | 554.54 | 399 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF279KUC.bed.gz | 3.52 MB | 040a697bd728ac4501ae56527ea1fba2 |
| ENCFF279KUC.tabix.bed.gz | 1.78 MB | f5efd2987f7723c2395b02f81e3a8a85 |
| ENCFF279KUC.tabix.bed.gz.tbi | 359.74 KB | d44de3c5a3c34c49f71292b16d401ca6 |
| genomic_resource.yaml | 2.17 KB | 132232546af1e4e87dc73cfd3902833d |
| statistics/ |