Resource
| Id | Histone_ChIP-seq/ENCSR919DBC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR919DBC [biosample_summary="Homo sapiens HUES6" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN420HJG|/analyses/ENCAN420HJG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN420HJG|/analyses/ENCAN420HJG/} has in progress subobject document {85a687a0-8a6d-4523-832d-6d7d2e620612|/documents/85a687a0-8a6d-4523-832d-6d7d2e620612/} audit_not_compliant: Processed alignments file {ENCFF003PIE|/files/ENCFF003PIE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 29770154 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF977KHF|/files/ENCFF977KHF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 26987776 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR919DBC | float |
Histone_ChIP-seq_ENCSR919DBC |
Histone_ChIP-seq ENCSR919DBC [biosample_summary="Homo sapiens HUES6" and target="H3K4me1"]
|
 |
[1.54, 14.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 152560551 | 4.74% | 193813 |
| chr1 | 14273350 | 5.73% | 17514 |
| chr2 | 12133411 | 5.01% | 15461 |
| chr3 | 10503983 | 5.30% | 13237 |
| chr4 | 7552408 | 3.97% | 9922 |
| chr5 | 8772432 | 4.83% | 10932 |
| chr6 | 9154731 | 5.36% | 11660 |
| chr7 | 7750004 | 4.86% | 10010 |
| chr8 | 6991641 | 4.82% | 8996 |
| chr9 | 6627591 | 4.79% | 8343 |
| chr10 | 7381124 | 5.52% | 9215 |
| chr11 | 8061980 | 5.97% | 10118 |
| chr12 | 7187793 | 5.39% | 9219 |
| chr13 | 4095292 | 3.58% | 5352 |
| chr14 | 4755210 | 4.44% | 6031 |
| chr15 | 5115547 | 5.02% | 6255 |
| chr16 | 4603231 | 5.10% | 6024 |
| chr17 | 6089771 | 7.31% | 7684 |
| chr18 | 3811233 | 4.74% | 4774 |
| chr19 | 3112382 | 5.31% | 4622 |
| chr20 | 3928080 | 6.10% | 5069 |
| chr21 | 1594363 | 3.41% | 2040 |
| chr22 | 2839836 | 5.59% | 3524 |
| chrX | 6225158 | 3.99% | 7811 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 193813 | 170 | 11859 | 787.15 | 609 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF100AUQ.bed.gz | 4.42 MB | 4327cf73f02c70ab7a02533c3b8a535e |
| ENCFF100AUQ.tabix.bed.gz | 1.98 MB | eac897a2668907209bd32f5c9a644225 |
| ENCFF100AUQ.tabix.bed.gz.tbi | 492.13 KB | 3e7eb5910894e50ba94fe8e7b2717568 |
| genomic_resource.yaml | 2.61 KB | 3e62b4ee47cd0e299d3387ced212b441 |
| statistics/ |